Ebolavirus comparative genomics

被引:42
作者
Jun, Se-Ran [1 ,2 ]
Leuze, Michael R. [3 ]
Nookaew, Intawat [1 ]
Uberbacher, Edward C. [1 ]
Land, Miriam [1 ]
Zhang, Qian [1 ,4 ]
Wanchai, Visanu [1 ]
Chai, Juanjuan [3 ]
Nielsen, Morten [5 ,6 ]
Trolle, Thomas [5 ]
Lund, Ole [5 ]
Buzard, Gregory S. [7 ]
Pedersen, Thomas D. [5 ,8 ]
Wassenaar, Trudy M. [9 ]
Ussery, David W. [1 ,4 ,5 ]
机构
[1] Oak Ridge Natl Lab, Comparat Genom Grp, Biosci Div, Oak Ridge, TN 37831 USA
[2] Univ Tennessee, Joint Inst Computat Sci, Knoxville, TN 37996 USA
[3] Oak Ridge Natl Lab, Comp Sci Res Grp, Comp Sci & Math Div, Oak Ridge, TN 37831 USA
[4] Univ Tennessee, UT ORNL Grad Sch Genome Sci & Technol, Knoxville, TN 37996 USA
[5] Tech Univ Denmark, Dept Syst Biol, Ctr Biol Sequence Anal, DK-2800 Lyngby, Denmark
[6] Univ Nacl San Martin, Inst Invest Biotecnol, Buenos Aires, DF, Argentina
[7] Booze Allen Hamilton, Mclean, VA 22101 USA
[8] Chr Hansen AS, Cultures & Enzymes Div, Assays, Horsholm, Denmark
[9] Mol Microbiol & Genom Consultants, D-55576 Zotzenheim, Germany
关键词
Ebola; comparative genomics; viral genomes; epitope prediction; Ebola virus disease (EVD); Filovirus; WHOLE-PROTEOME PHYLOGENY; ALIGNMENT-FREE METHOD; T-CELL EPITOPES; MONOCLONAL-ANTIBODIES; MAXIMUM-LIKELIHOOD; VIRUS DISEASE; PREDICTION; RESPONSES; DATABASE; ZAIRE;
D O I
10.1093/femsre/fuv031
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
This manuscript has been authored by UT-Battelle, LLC under Contract No. DE-AC05-00OR22725 with the U.S. Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes. The Department of Energy will provide public access to these results of federally sponsored research in accordance with the DOE Public Access Plan Variation within Ebola genomes is most common in the intergenic regions and within specific areas of the genes encoding the glycoprotein (GP), nucleoprotein (NP) and polymerase (L); genomic conservation and epitope prediction, combined with glycosylation sites and experimentally determined epitopes, can identify the most promising regions for the development of therapeutic strategies.Variation within Ebola genomes is most common in the intergenic regions and within specific areas of the genes encoding the glycoprotein (GP), nucleoprotein (NP) and polymerase (L); genomic conservation and epitope prediction, combined with glycosylation sites and experimentally determined epitopes, can identify the most promising regions for the development of therapeutic strategies.
引用
收藏
页码:764 / 778
页数:15
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