DNA purification from crude samples for human identification using gradient elution isotachophoresis

被引:6
作者
Strychalski, Elizabeth A. [1 ]
Konek, Christopher [2 ]
Butts, Erica L. R. [1 ]
Vallone, Peter M. [1 ]
Henry, Alyssa C. [2 ]
Ross, David [1 ]
机构
[1] NIST, Mat Measurement Lab, Gaithersburg, MD 20899 USA
[2] Appl Res Associates Inc, Alexandria, VA USA
关键词
DNA; Forensic DNA typing; Gradient elution isotachophoresis; Human identification; Soil; MOVING BOUNDARY ELECTROPHORESIS; VALIDATION; SEPARATION; EXTRACTION; MULTIPLEX;
D O I
10.1002/elps.201300133
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Gradient elution isotachophoresis (GEITP) was demonstrated for DNA purification, concentration, and quantification from crude samples, represented here by soiled buccal swabs, with minimal sample preparation prior to human identification using STR analysis. During GEITP, an electric field applied across leading and trailing electrolyte solutions resulted in isotachophoretic focusing of DNA at the interface between these solutions, while a pressure-driven counterflow controlled the movement of the interface from the sample reservoir into a microfluidic capillary. This counterflow also prevented particulates from fouling or clogging the capillary and reduced or eliminated contamination of the delivered DNA by PCR inhibitors. On-line DNA quantification using laser-induced fluorescence compared favorably with quantitative PCR measurements and potentially eliminates the need for quantitative PCR prior to STR analysis. GEITP promises to address the need for a rapid and robust method to deliver DNA from crude samples to aid the forensic community in human identification.
引用
收藏
页码:2522 / 2530
页数:9
相关论文
共 27 条
[1]   Rapid Detection of Urinary Tract Infections Using Isotachophoresis and Molecular Beacons [J].
Bercovici, M. ;
Kaigala, G. V. ;
Mach, K. E. ;
Han, C. M. ;
Liao, J. C. ;
Santiago, J. G. .
ANALYTICAL CHEMISTRY, 2011, 83 (11) :4110-4117
[2]   Rapid hybridization of nucleic acids using isotachophoresis [J].
Bercovici, Moran ;
Han, Crystal M. ;
Liao, Joseph C. ;
Santiago, Juan G. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (28) :11127-11132
[3]  
Butts E. L. R., EXPLORING DNA EXTRAC
[4]   Efficiency of DNA IQ System((R)) in recovering semen DNA from cotton swabs [J].
Colussi, A. ;
Viegas, M. ;
Beltramo, J. ;
Lojo, M. .
FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES, 2009, 2 (01) :87-88
[5]  
da Silva JAF, 1998, ANAL CHEM, V70, P4339
[6]   Transport and separation of micron sized particles at isotachophoretic transition zones [J].
Goet, Gabriele ;
Baier, Tobias ;
Hardt, Steffen .
BIOMICROFLUIDICS, 2011, 5 (01)
[7]   Optimization of DNA extraction from low-yield and degraded samples using the BioRobot® EZ1 and BioRobot® M48 [J].
Kishore, Ram ;
Hardy, W. Reef ;
Anderson, Vince J. ;
Sanchez, Nick A. ;
Buoncristiani, Martin R. .
JOURNAL OF FORENSIC SCIENCES, 2006, 51 (05) :1055-1061
[8]   Concentration and isolation of DNA from biological fluids by agarose gel isotachophoresis [J].
Kondratova, VN ;
Serd'uk, OI ;
Shelepov, VP ;
Lichtenstein, A .
BIOTECHNIQUES, 2005, 39 (05) :695-699
[9]   Gradient elution isotachophoresis with direct ultraviolet absorption detection for sensitive amino acid analysis [J].
Mamunooru, Manasa ;
Jenkins, Ronald J. ;
Davis, Nejea I. ;
Shackman, Jonathan G. .
JOURNAL OF CHROMATOGRAPHY A, 2008, 1202 (02) :203-211
[10]   Integrated Printed Circuit Board Device for Cell Lysis and Nucleic Acid Extraction [J].
Marshall, Lewis A. ;
Wu, Liang Li ;
Babikian, Sarkis ;
Bachman, Mark ;
Santiago, Juan G. .
ANALYTICAL CHEMISTRY, 2012, 84 (21) :9640-9645