Conjunction of factors triggering waves of seasonal influenza

被引:28
作者
Chattopadhyay, Ishanu [1 ,2 ]
Kiciman, Emre [3 ]
Elliott, Joshua W. [4 ]
Shaman, Jeffrey L. [5 ]
Rzhetsky, Andrey [1 ,2 ,4 ,6 ]
机构
[1] Univ Chicago, Inst Genom & Syst Biol, Chicago, IL 60637 USA
[2] Univ Chicago, Dept Med, Chicago, IL 60637 USA
[3] Microsoft Res, Informat & Data Sci Grp, Redmond, WA USA
[4] Univ Chicago, Compuat Inst, Chicago, IL 60637 USA
[5] Columbia Univ, Dept Environm Hlth Sci, Mailman Sch Publ Hlth, New York, NY USA
[6] Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA
基金
美国国家卫生研究院;
关键词
GRANGER CAUSALITY; ABSOLUTE-HUMIDITY; SCHOOL CLOSURE; TRANSMISSION; DYNAMICS; EMERGENCE; VACCINE; SPREAD; TEMPERATURE; STATISTICS;
D O I
10.7554/eLife.30756
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Using several longitudinal datasets describing putative factors affecting influenza incidence and clinical data on the disease and health status of over 150 million human subjects observed over a decade, we investigated the source and the mechanistic triggers of influenza epidemics. We conclude that the initiation of a pan-continental influenza wave emerges from the simultaneous realization of a complex set of conditions. The strongest predictor groups are as follows, ranked by importance: (1) the host population's socio- and ethno-demographic properties; (2) weather variables pertaining to specific humidity, temperature, and solar radiation; (3) the virus' antigenic drift over time; (4) the host population' (sic)(TM) s land-based travel habits, and; (5) recent spatio-temporal dynamics, as reflected in the influenza wave auto-correlation. The models we infer are demonstrably predictive (area under the Receiver Operating Characteristic curve 80%) when tested with out-of-sample data, opening the door to the potential formulation of new population level intervention and mitigation policies.
引用
收藏
页数:44
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