Metabolomic profiling elucidates community dynamics of the Ketogulonicigenium vulgare-Bacillus megaterium consortium

被引:39
作者
Du, Jin [1 ]
Zhou, Jian [1 ]
Xue, Jia [1 ]
Song, Hao [2 ]
Yuan, Yingjin [1 ]
机构
[1] Tianjin Univ, Key Lab Syst Bioengn, Sch Chem Engn & Technol, Minist Educ,Dept Pharmaceut Engn, Tianjin 300072, Peoples R China
[2] Nanyang Technol Univ, Sch Chem & Biomed Engn, Singapore 637457, Singapore
基金
中国国家自然科学基金;
关键词
Community dynamics; Metabolomics; Dual-species consortium; MIXED CULTURE; GENE-EXPRESSION; STRAIN; BIODEGRADATION; COMMUNICATION; COOPERATION; PROTEIN; STRESS; GROWTH;
D O I
10.1007/s11306-011-0392-2
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Many microbial consortia are established upon metabolic interactions. Elucidating such interactions is a priority in understanding the population dynamics of these microbial consortia. In this study, we investigated the interaction dynamics of the vitamin C biosynthesis consortium comprising of Ketogulonicigenium vulgare and Bacillus megaterium. We systematically quantified the dynamic evolution of the ecosystem's population and metabolism in response to a wide range of seeding concentrations and compositions of the two microorganisms. The consortium population dynamics was determined by quantitative PCR. The metabolomic profile of the community was systematically investigated by gas chromatography coupled with time-of-flight mass spectrometry. Our results showed that B. megaterium was responsible for initiating the reproduction of K. vulgare, meanwhile, K. vulgare could promote the growth of B. megaterium. Principal component analysis of the metabolomic profiling elucidated variations of intermediates in central carbon metabolism, nucleotide and amino acids metabolism in this microbial consortium. These findings provided new insights into the characterization of the community dynamics and the optimization of co-culture fermentation for vitamin C biosynthesis.
引用
收藏
页码:960 / 973
页数:14
相关论文
共 40 条
[31]   Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal [J].
Wilmes, Paul ;
Andersson, Anders F. ;
Lefsrud, Mark G. ;
Wexler, Margaret ;
Shah, Manesh ;
Zhang, Bing ;
Hettich, Robert L. ;
Bond, Philip L. ;
VerBerkmoes, Nathan C. ;
Banfield, Jillian F. .
ISME JOURNAL, 2008, 2 (08) :853-864
[32]   Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles [J].
Wilmes, Paul ;
Bond, Philip L. .
CURRENT OPINION IN MICROBIOLOGY, 2009, 12 (03) :310-317
[33]   Mutation of Gluconobacter oxydans and Bacillus megaterium in a two-step process of L-ascorbic acid manufacture by ion beam [J].
Xu, A ;
Yao, J ;
Yu, L ;
Lv, S ;
Wang, J ;
Yan, B ;
Yu, Z .
JOURNAL OF APPLIED MICROBIOLOGY, 2004, 96 (06) :1317-1323
[34]   Integrating '-omics' and natural product discovery platforms to investigate metabolic exchange in microbiomes [J].
Yang, Jane Y. ;
Karr, Jessica R. ;
Watrous, Jeramie D. ;
Dorrestein, Pieter C. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2011, 15 (01) :79-87
[35]   Translating metabolic exchange with imaging mass spectrometry [J].
Yang, Yu-Liang ;
Xu, Yuquan ;
Straight, Paul ;
Dorrestein, Pieter C. .
NATURE CHEMICAL BIOLOGY, 2009, 5 (12) :885-887
[36]  
Yin Guanglin, 2001, Weishengwu Xuebao, V41, P709
[37]   Purification and properties of a new l-sorbose dehydrogenase accelerative protein from bacillus megaterium bred by ion-beam implantation [J].
Key Laboratory of Ion Beam Bioengineering, Institute of Plasma Physics, Chinese Academy of Sciences, Hefei 230031, China .
Plasma Sci. Technol., 2008, 3 (398-402) :398-402
[38]  
Zhou Bin, 2002, Yingyong Shengtai Xuebao, V13, P1452
[39]   Metabolome Profiling Reveals Metabolic Cooperation between Bacillus megaterium and Ketogulonicigenium vulgare during Induced Swarm Motility [J].
Zhou, Jian ;
Ma, Qian ;
Yi, Hong ;
Wang, Lili ;
Song, Hao ;
Yuan, Ying-Jin .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (19) :7023-7030
[40]   The effect of pfl gene knockout on the metabolism for optically pure D-lactate production by Escherichia coli [J].
Zhu, J ;
Shimizu, K .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2004, 64 (03) :367-375