Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.)

被引:19
作者
Khedikar, Yogendra [1 ,2 ]
Pandey, Manish K. [2 ]
Sujay, V. [1 ,2 ]
Singh, Sube [2 ]
Nayak, Spurthi N. [2 ,3 ]
Klein-Gebbinck, Henry W. [4 ]
Sarvamangala, Cholin [1 ,2 ]
Mukri, Ganapati [1 ]
Garg, Vanika [2 ]
Upadhyaya, Hari D. [2 ]
Nadaf, H. L. [3 ]
Gowda, M. V. C. [1 ]
Varshney, Rajeev K. [2 ]
Bhat, Ramesh S. [3 ]
机构
[1] Univ Agr Sci, Dept Genet & Plant Breeding, Dharwad, Karnataka, India
[2] Int Crops Res Inst Semi Arid Trop, Hyderabad, Andhra Pradesh, India
[3] Univ Agr Sci, Dept Biotechnol, Dharwad, Karnataka, India
[4] Agr & Agri Food Canada, Beaverlodge Res Farm, Beaverlodge, AB, Canada
关键词
Peanut; QTLanalysis; Epistatic interaction; Agro-morphological traits; Yield; LATE LEAF-SPOT; RUST RESISTANCE; QTL; GENOME; OIL; DURANENSIS; GENES; ELITE;
D O I
10.1007/s11032-017-0764-z
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
An effort was made in the present study to identify the main effect and epistatic quantitative trait locus (QTL) for the morphological and yield-related traits in peanut. A recombinant inbred line (RIL) population derived from TAG 24 x GPBD 4 was phenotyped in seven environments at two locations. QTL analysis with available genetic map identified 62 main-effect QTLs (M-QTLs) for ten morphological and yield-related traits with the phenotypic variance explained (PVE) of 3.84-15.06%. Six major QTLs (PVE > 10%) were detected for PLHT, PPP, YPP, and SLNG. Stable M-QTLs appearing in at least two environments were detected for PLHT, LLN, YPP, YKGH, and HSW. Five M-QTLs governed two traits each, and 16 genomic regions showed co-localization of two to four M-QTLs. Intriguingly, a major QTL reported to be linked to rust resistance showed pleiotropic effect for yield-attributing traits like YPP (15.06%, PVE) and SLNG (13.40%, PVE). Of the 24 epistatic interactions identified across the traits, five interactions involved six M-QTLs. Three interactions were additive x additive and remaining two involved QTL x environment (QE) interactions. Only one major M-QTL governing PLHT showed epistatic interaction. Overall, this study identified the major M-QTLs for the important productivity traits and also described the lack of epistatic interactions for majority of them so that they can be conveniently employed in peanut breeding.
引用
收藏
页数:12
相关论文
共 43 条
[1]   The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut [J].
Bertioli, David John ;
Cannon, Steven B. ;
Froenicke, Lutz ;
Huang, Guodong ;
Farmer, Andrew D. ;
Cannon, Ethalinda K. S. ;
Liu, Xin ;
Gao, Dongying ;
Clevenger, Josh ;
Dash, Sudhansu ;
Ren, Longhui ;
Moretzsohn, Marcio C. ;
Shirasawa, Kenta ;
Huang, Wei ;
Vidigal, Bruna ;
Abernathy, Brian ;
Chu, Ye ;
Niederhuth, Chad E. ;
Umale, Pooja ;
Araujo, Ana Claudia G. ;
Kozik, Alexander ;
Do Kim, Kyung ;
Burow, Mark D. ;
Varshney, Rajeev K. ;
Wang, Xingjun ;
Zhang, Xinyou ;
Barkley, Noelle ;
Guimaraes, Patricia M. ;
Isobe, Sachiko ;
Guo, Baozhu ;
Liao, Boshou ;
Stalker, H. Thomas ;
Schmitz, Robert J. ;
Scheffler, Brian E. ;
Leal-Bertioli, Soraya C. M. ;
Xun, Xu ;
Jackson, Scott A. ;
Michelmore, Richard ;
Ozias-Akins, Peggy .
NATURE GENETICS, 2016, 48 (04) :438-+
[2]   Epistasis interaction of QTL effects as a genetic parameter influencing estimation of the genetic additive effect [J].
Bocianowski, Jan .
GENETICS AND MOLECULAR BIOLOGY, 2013, 36 (01) :93-100
[3]   Epistasis:: too often neglected in complex trait studies? [J].
Carlborg, Ö ;
Haley, CS .
NATURE REVIEWS GENETICS, 2004, 5 (08) :618-U4
[4]   Quantitative trait locus analysis for pod- and kernel-related traits in the cultivated peanut (Arachis hypogaea L.) [J].
Chen, Weigang ;
Jiao, Yongqing ;
Cheng, Liangqiang ;
Huang, Li ;
Liao, Boshou ;
Tang, Mei ;
Ren, Xiaoping ;
Zhou, Xiaojing ;
Chen, Yuning ;
Jiang, Huifang .
BMC GENETICS, 2016, 17
[5]   Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens [J].
Chen, Xiaoping ;
Li, Hongjie ;
Pandey, Manish K. ;
Yang, Qingli ;
Wang, Xiyin ;
Garg, Vanika ;
Li, Haifen ;
Chi, Xiaoyuan ;
Doddamani, Dadakhalandar ;
Hong, Yanbin ;
Upadhyaya, Hari ;
Guo, Hui ;
Khan, Aamir W. ;
Zhu, Fanghe ;
Zhang, Xiaoyan ;
Pan, Lijuan ;
Pierce, Gary J. ;
Zhou, Guiyuan ;
Krishnamohan, Katta A. V. S. ;
Chen, Mingna ;
Zhong, Ni ;
Agarwal, Gaurav ;
Li, Shuanzhu ;
Chitikineni, Annapurna ;
Zhang, Guo-Qiang ;
Sharma, Shivali ;
Chen, Na ;
Liu, Haiyan ;
Janila, Pasupuleti ;
Li, Shaoxiong ;
Wang, Min ;
Wang, Tong ;
Sun, Jie ;
Li, Xingyu ;
Li, Chunyan ;
Wang, Mian ;
Yu, Lina ;
Wen, Shijie ;
Singh, Sube ;
Yang, Zhen ;
Zhao, Jinming ;
Zhang, Chushu ;
Yu, Yue ;
Bi, Jie ;
Zhang, Xiaojun ;
Liu, Zhong-Jian ;
Paterson, Andrew H. ;
Wang, Shuping ;
Liang, Xuanqiang ;
Varshney, Rajeev K. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (24) :6785-6790
[6]  
DWIVEDI S L, 1989, Peanut Science, V16, P14, DOI 10.3146/i0095-3679-16-1-4
[7]   Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.) [J].
Gautami, B. ;
Pandey, M. K. ;
Vadez, V. ;
Nigam, S. N. ;
Ratnakumar, P. ;
Krishnamurthy, L. ;
Radhakrishnan, T. ;
Gowda, M. V. C. ;
Narasu, M. L. ;
Hoisington, D. A. ;
Knapp, S. J. ;
Varshney, R. K. .
MOLECULAR BREEDING, 2012, 30 (02) :757-772
[8]  
GenStat Committee, 2010, GENST V12 2
[9]  
Gowda M. V. C., 2002, International Arachis Newsletter, P29
[10]   Mapping of important taxonomic and productivity traits using genic and non-genic transposable element markers in peanut (Arachis hypogaea L.) [J].
Hake, Anil A. ;
Shirasawa, Kenta ;
Yadawad, Arati ;
Sukruth, M. ;
Patil, Malagouda ;
Nayak, Spurthi N. ;
Lingaraju, S. ;
Patil, P. V. ;
Nadaf, H. L. ;
Gowda, M. V. C. ;
Bhat, R. S. .
PLOS ONE, 2017, 12 (10)