Long noncoding RNA-based chromatin control of germ cell differentiation: a yeast perspective

被引:22
作者
Hiriart, Edwige [1 ,2 ]
Verdel, Andre [1 ,2 ,3 ]
机构
[1] INSERM, U823, Grenoble, France
[2] Univ Grenoble 1, Fac Med, Inst Albert Bonniot, Grenoble, France
[3] Inst Albert Bonniot, Dept Differenciat & Transformat Cellulaire, F-38706 La Tronche, France
基金
欧洲研究理事会;
关键词
long noncoding RNA; lncRNA; chromatin; gene silencing; germ cell differentiation; sporulation; yeast; Schizosaccharomyces pombe; Saccharomyces cerevisiae; MEIOTIC REGULATOR MEI2P; ZINC-FINGER PROTEIN; SEXUAL-DIFFERENTIATION; MESSENGER-RNAS; HETEROCHROMATIN FORMATION; TRANSCRIPTIONAL PROGRAM; PERVASIVE TRANSCRIPTION; SELECTIVE ELIMINATION; MEIOSIS; GENE;
D O I
10.1007/s10577-013-9393-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Germ cell differentiation, the cellular process by which a diploid progenitor cell produces by meiotic divisions haploid cells, is conserved from the unicellular yeasts to mammals. Over the recent years, yeast germ cell differentiation process has proven to be a powerful biological system to identify and study several long noncoding RNAs (lncRNAs) that play a central role in regulating cellular differentiation by acting directly on chromatin. Remarkably, in the well-studied budding yeast Saccharomyces cerevisiae and fission yeast Schizosaccharomyces pombe, the lncRNA-based chromatin regulations of germ cell differentiation are quite different. In this review, we present an overview of these regulations by focusing on the mechanisms and their respective functions both in S. cerevisiae and in S. pombe. Part of these lncRNA-based chromatin regulations may be conserved in other eukaryotes and play critical roles either in the context of germ cell differentiation or, more generally, in the development of multicellular organisms.
引用
收藏
页码:653 / 663
页数:11
相关论文
共 81 条
[1]   Pervasive transcription constitutes a new level of eukaryotic genome regulation [J].
Berretta, Julia ;
Morillon, Antonin .
EMBO REPORTS, 2009, 10 (09) :973-982
[2]   A Small-RNA Perspective on Gametogenesis, Fertilization, and Early Zygotic Development [J].
Bourc'his, Deborah ;
Voinnet, Olivier .
SCIENCE, 2010, 330 (6004) :617-622
[3]   Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome [J].
Cam, HP ;
Sugiyama, T ;
Chen, ES ;
Chen, X ;
FitzGerald, PC ;
Grewal, SIS .
NATURE GENETICS, 2005, 37 (08) :809-819
[4]   Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription [J].
Carrozza, MJ ;
Li, B ;
Florens, L ;
Suganuma, T ;
Swanson, SK ;
Lee, KK ;
Shia, WJ ;
Anderson, S ;
Yates, J ;
Washburn, MP ;
Workman, JL .
CELL, 2005, 123 (04) :581-592
[5]   RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond [J].
Castel, Stephane E. ;
Martienssen, Robert A. .
NATURE REVIEWS GENETICS, 2013, 14 (02) :100-112
[6]   Mir-34a Is Upregulated during Liver Regeneration in Rats and Is Associated with the Suppression of Hepatocyte Proliferation [J].
Chen, Huan ;
Sun, Yimin ;
Dong, Ruiqi ;
Yang, Shengsheng ;
Pan, Chuanyong ;
Xiang, Dao ;
Miao, Mingyong ;
Jiao, Binghua .
PLOS ONE, 2011, 6 (05)
[7]   RNA decay machines: The exosome [J].
Chlebowski, Aleksander ;
Lubas, Michal ;
Jensen, Torben Heick ;
Dziembowski, Andrzej .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2013, 1829 (6-7) :552-560
[8]   The transcriptional program of sporulation in budding yeast [J].
Chu, S ;
DeRisi, J ;
Eisen, M ;
Mulholland, J ;
Botstein, D ;
Brown, PO ;
Herskowitz, I .
SCIENCE, 1998, 282 (5389) :699-705
[9]   THE YEAST RME1 GENE ENCODES A PUTATIVE ZINC FINGER PROTEIN THAT IS DIRECTLY REPRESSED BY A1-ALPHA-2 [J].
COVITZ, PA ;
HERSKOWITZ, I ;
MITCHELL, AP .
GENES & DEVELOPMENT, 1991, 5 (11) :1982-1989
[10]   REPRESSION BY THE YEAST MEIOTIC INHIBITOR RME1 [J].
COVITZ, PA ;
MITCHELL, AP .
GENES & DEVELOPMENT, 1993, 7 (08) :1598-1608