Diastereomer Configurations from Joint Experimental-Computational Analysis

被引:9
作者
Aliev, Abil E. [1 ]
Mia, Zakirin A. [1 ]
Busson, Mathilde J. M. [1 ]
Fitzmaurice, Richard J. [1 ]
Caddick, Stephen [1 ]
机构
[1] UCL, Dept Chem, London WC1H 0AJ, England
关键词
MOLECULAR-DYNAMICS SIMULATIONS; MAIN-GROUP THERMOCHEMISTRY; BORN SOLVATION MODEL; NMR CHEMICAL-SHIFTS; CONFORMATIONAL-ANALYSIS; FORCE-FIELDS; RELATIVE CONFIGURATION; DENSITY FUNCTIONALS; ACCURACY; ENERGIES;
D O I
10.1021/jo301119h
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
The potential of the approach combining nuclear magnetic resonance (NMR) spectroscopy, relaxed grid search (RGS), molecular dynamics (MD) simulations, and quantum mechanical (QM) calculations for the determination of diastereomer configurations is demonstrated using four diastereomers of a trisubstituted epoxide. Since the change in configuration of the chiral center is expected to change the distribution of conformer populations (including those of side-chain rotamers), changes in NMR parameters [chemical shifts, J couplings, and nuclear Overhauser effects (NOEs)] are expected. The method therefore relies on (1) identification of possible conformations in each diastereomer using relaxed grid search analysis and MD simulations; (2) geometry optimizations of conformers selected from step (1), followed by calculations of their relative energies (populations) using QM methods; (3) calculations of averaged NMR parameters using QM methods; (4) matching calculated and experimental values of NMR parameters of diastereomers. The diastereomer configurations are considered resolved, if three NMR parameters different in nature, chemical shifts, J couplings, and NOEs, are in agreement. A further advantage of this method is that full structural and dynamics characterization of each of the diastereomers is achieved based on the joint analysis of experimental and computational data.
引用
收藏
页码:6290 / 6295
页数:6
相关论文
共 59 条
[1]   Conformational analysis of L-prolines in water [J].
Aliev, Abil E. ;
Courtier-Murias, Denis .
JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (50) :14034-14042
[2]   Structures in Solutions from Joint Experimental-Computational Analysis: Applications to Cyclic Molecules and Studies of Noncovalent Interactions [J].
Aliev, Abil E. ;
Mia, Zakirin A. ;
Khaneja, Harmeet S. ;
King, Frank D. .
JOURNAL OF PHYSICAL CHEMISTRY A, 2012, 116 (03) :1093-1109
[3]   Experimental Verification of Force Fields for Molecular Dynamics Simulations Using Gly-Pro-Gly-Gly [J].
Aliev, Abil E. ;
Courtier-Murias, Denis .
JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (38) :12358-12375
[4]   A combined NMR/MD/QM approach for structure and dynamics elucidations in the solution state: pilot studies using tetrapeptides [J].
Aliev, Abil E. ;
Courtier-Murias, Denis ;
Bhandal, Simrath ;
Zhou, Shen .
CHEMICAL COMMUNICATIONS, 2010, 46 (05) :695-697
[5]   Quantum Mechanical and NMR Studies of Ring Puckering and cis/trans-Rotameric Interconversion in Prolines and Hydroxyprolines [J].
Aliev, Abil E. ;
Bhandal, Simrath ;
Courtier-Murias, Denis .
JOURNAL OF PHYSICAL CHEMISTRY A, 2009, 113 (40) :10858-10865
[6]   Scaling factors for carbon NMR chemical shifts obtained from DFF B3LYP calculations [J].
Aliev, Abil E. ;
Courtier-Murias, Denis ;
Zhou, Shen .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2009, 893 (1-3) :1-5
[7]  
ALIEV AE, 1992, MENDELEEV COMMUN, P130
[8]   DFT calculations of 1H chemical shifts, simulated and experimental NMR spectra for sarcosine [J].
Atieh, Z. ;
Allouche, A. R. ;
Lazariev, A. ;
Van Ormondt, D. ;
Graveron-Demilly, D. ;
Aubert-Frecon, M. .
CHEMICAL PHYSICS LETTERS, 2010, 492 (4-6) :297-301
[9]   Computational NMR spectroscopy: reversing the information flow [J].
Bagno, Alessandro ;
Saielli, Giacomo .
THEORETICAL CHEMISTRY ACCOUNTS, 2007, 117 (5-6) :603-619
[10]   An efficient synthesis of epoxydiynes and a key fragment of neocarzinostatin chromophore [J].
Baker, J. R. ;
Thominet, O. ;
Britton, H. ;
Caddick, S. .
ORGANIC LETTERS, 2007, 9 (01) :45-48