Integrating Next-Generation Sequencing in the Clinical Pharmacogenomics Workflow

被引:26
|
作者
Giannopoulou, Efstathia [1 ]
Katsila, Theodora [1 ]
Mitropoulou, Christina [2 ]
Tsermpini, Evangelia-Eirini [1 ]
Patrinos, George P. [1 ,3 ,4 ]
机构
[1] Univ Patras, Sch Hlth Sci, Dept Pharm, Patras, Greece
[2] Golden Helix Fdn, London, England
[3] United Arab Emirates Univ, Coll Med & Hlth Sci, Dept Pathol, Al Ain, U Arab Emirates
[4] United Arab Emirates Univ, Zayed Ctr Hlth Sci, Al Ain, U Arab Emirates
来源
FRONTIERS IN PHARMACOLOGY | 2019年 / 10卷
基金
欧盟地平线“2020”;
关键词
clinical pharmacogenomics; workflow; implementation; next-generation sequencing; clinical decision support tools; GENOMICS; VARIANTS; DRUGS;
D O I
10.3389/fphar.2019.00384
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Pharmacogenomics has been recognized as a fundamental tool in the era of personalized medicine with up to 266 drug labels, approved by major regulatory bodies, currently containing pharmacogenomics information. Next-generation sequencing analysis assumes a critical role in personalized medicine, providing a comprehensive profile of an individual's variome, particularly that of clinical relevance, comprising of pathogenic variants and pharmacogenomic biomarkers. Here, we propose a strategy to integrate next-generation sequencing into the current clinical pharmacogenomics workflow from deep resequencing to pharmacogenomics consultation, according to the existing guidelines and recommendations.
引用
收藏
页数:6
相关论文
共 50 条
  • [1] The Use of Next-Generation Sequencing in Pharmacogenomics
    Enko, Dietmar
    Michaelis, Simon
    Schneider, Christopher
    Schaflinger, Erich
    Baranyi, Andreas
    Schnedl, Wolfgang J.
    Muller, Daniel J.
    CLINICAL LABORATORY, 2023, 69 (08) : 1569 - 1575
  • [2] Next-generation sequencing in pharmacogenomics - fit for clinical decision support?
    Zhou, Yitian
    Lauschke, Volker M.
    EXPERT REVIEW OF CLINICAL PHARMACOLOGY, 2024, 17 (03) : 213 - 223
  • [3] Integrating next-generation sequencing into clinical cancer diagnostics
    Chan, Maurice
    Lee, Charlie W-H
    Wu, Mengchu
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2013, 13 (07) : 647 - 650
  • [4] Challenges of Workflow Documentation in the Clinical Next-Generation Sequencing Laboratory
    Scott, C. M.
    Hampel, K. J.
    Bruso, D.
    Sidiropoulos, N.
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2015, 17 (06): : 801 - 801
  • [5] The Role of Next-Generation Sequencing in Pharmacogenetics and Pharmacogenomics
    Schwarz, Ute, I
    Gulilat, Markus
    Kim, Richard B.
    COLD SPRING HARBOR PERSPECTIVES IN MEDICINE, 2019, 9 (02):
  • [6] Clinical Next-Generation Sequencing: Automation of Result Interpretation and Reporting Workflow
    Roy, S.
    Durso, M. B.
    Wald, A.
    Ng, Y. K.
    Nikiforov, Y. E.
    Nikiforova, M. N.
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2013, 15 (06): : 910 - 910
  • [7] Pharmacogenomics and personalized medicine: the plunge into next-generation sequencing
    Wadelius, Mia
    Alfirevic, Ana
    GENOME MEDICINE, 2011, 3
  • [8] Pharmacogenomics and personalized medicine: the plunge into next-generation sequencing
    Mia Wadelius
    Ana Alfirevic
    Genome Medicine, 3
  • [9] Integrating next-generation sequencing into clinical oncology: strategies, promises and pitfalls
    Horak, Peter
    Frohling, Stefan
    Glimm, Hanno
    ESMO OPEN, 2016, 1 (05)
  • [10] Next-generation sequencing in clinical microbiology
    Wain, John
    Mavrogiorgou, Eleni
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2013, 13 (03) : 225 - 227