Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria

被引:421
作者
Wegener, Gunter [1 ,2 ]
Krukenberg, Viola [1 ]
Riedel, Dietmar [3 ]
Tegetmeyer, Halina E. [4 ,5 ]
Boetius, Antje [1 ,2 ,4 ]
机构
[1] Max Planck Inst Marine Mikrobiol, D-28359 Bremen, Germany
[2] Univ Bremen, Ctr Marine Environm Sci, MARUM, D-28359 Bremen, Germany
[3] Max Planck Inst Biophys Chem, D-37077 Gottingen, Germany
[4] Alfred Wegener Inst Helmholtz Ctr Polar & Marine, D-27570 Bremerhaven, Germany
[5] Univ Bielefeld, Ctr Biotechnol, D-33615 Bielefeld, Germany
关键词
ANAEROBIC OXIDATION; MICROBIAL COMMUNITIES; METHANE; SULFATE; PROTEIN; GENOME; IDENTIFICATION; REDUCTION; ENZYMES; METHANOGENESIS;
D O I
10.1038/nature15733
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The anaerobic oxidation of methane (AOM) with sulfate controls the emission of the greenhouse gas methane from the ocean floor(1,2). In marine sediments, AOM is performed by dual-species consortia of anaerobic methanotrophic archaea (ANME) and sulfate-reducing bacteria (SRB) inhabiting the methane-sulfate transition zone(3-5). The biochemical pathways and biological adaptations enabling this globally relevant process are not fully understood. Here we study the syntrophic interaction in thermophilic AOM (TAOM) between ANME-1 archaea and their consortium partner SRB HotSeep-1 (ref. 6) at 60 degrees C to test the hypothesis of a direct interspecies exchange of electrons(7,8.) The activity of TAOM consortia was compared to the first ANME-free culture of an AOM partner bacterium that grows using hydrogen as the sole electron donor. The thermophilic ANME-1 do not produce sufficient hydrogen to sustain the observed growth of the HotSeep-1 partner. Enhancing the growth of the HotSeep-1 partner by hydrogen addition represses methane oxidation and the metabolic activity of ANME-1. Further supporting the hypothesis of direct electron transfer between the partners, we observe that under TAOM conditions, both ANME and the HotSeep-1 bacteria overexpress genes for extracellular cytochrome production and form cell-to-cell connections that resemble the nanowire structures responsible for interspecies electron transfer between syntrophic consortia of Geobacter(9,10). HotSeep-1 highly expresses genes for pili production only during consortial growth using methane, and the nanowire-like structures are absent in HotSeep-1 cells isolated with hydrogen. These observations suggest that direct electron transfer is a principal mechanism in TAOM, which may also explain the enigmatic functioning and specificity of other methanotrophic ANME-SRB consortia.
引用
收藏
页码:587 / U315
页数:17
相关论文
共 54 条
[1]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[2]   A marine microbial consortium apparently mediating anaerobic oxidation of methane [J].
Boetius, A ;
Ravenschlag, K ;
Schubert, CJ ;
Rickert, D ;
Widdel, F ;
Gieseke, A ;
Amann, R ;
Jorgensen, BB ;
Witte, U ;
Pfannkuche, O .
NATURE, 2000, 407 (6804) :623-626
[3]  
Boetius A, 2013, NAT GEOSCI, V6, P725, DOI [10.1038/ngeo1926, 10.1038/NGEO1926]
[4]   INFLUENCE OF TEMPERATURE ON ENERGETICS OF HYDROGEN METABOLISM IN HOMOACETOGENIC, METHANOGENIC, AND OTHER ANAEROBIC-BACTERIA [J].
CONRAD, R ;
WETTER, B .
ARCHIVES OF MICROBIOLOGY, 1990, 155 (01) :94-98
[6]  
Eddy S., 2003, HMMER User's Guide. Biological Sequence Analysis Using Profile Hidden Markov Models
[7]   Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis [J].
Fernandes, Andrew D. ;
Reid, Jennifer N. S. ;
Macklaim, Jean M. ;
McMurrough, Thomas A. ;
Edgell, David R. ;
Gloor, Gregory B. .
MICROBIOME, 2014, 2
[8]   iPfam: a database of protein family and domain interactions found in the Protein Data Bank [J].
Finn, Robert D. ;
Miller, Benjamin L. ;
Clements, Jody ;
Bateman, Alex .
NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D364-D373
[9]   The TIGRFAMs database of protein families [J].
Haft, DH ;
Selengut, JD ;
White, O .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :371-373
[10]   Reverse methanogenesis: Testing the hypothesis with environmental genomics [J].
Hallam, SJ ;
Putnam, N ;
Preston, CM ;
Detter, JC ;
Rokhsar, D ;
Richardson, PM ;
DeLong, EF .
SCIENCE, 2004, 305 (5689) :1457-1462