Guiding the self-organization of random Boolean networks

被引:44
|
作者
Gershenson, Carlos [1 ]
机构
[1] Univ Nacl Autonoma Mexico, Inst Invest Matemat Aplicadas & Sistemas, Mexico City 01000, DF, Mexico
关键词
Guided self-organization; Random Boolean networks; Phase transitions; Criticality; Adaptability; Evolvability; Robustness; MUTATIONAL ROBUSTNESS; REGULATORY NETWORKS; PHASE-TRANSITIONS; EVOLUTION; DYNAMICS; COMPLEXITY; EMERGENCE; EVOLVABILITY; COMPUTATION; ATTRACTORS;
D O I
10.1007/s12064-011-0144-x
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Random Boolean networks (RBNs) are models of genetic regulatory networks. It is useful to describe RBNs as self-organizing systems to study how changes in the nodes and connections affect the global network dynamics. This article reviews eight different methods for guiding the self-organization of RBNs. In particular, the article is focused on guiding RBNs toward the critical dynamical regime, which is near the phase transition between the ordered and dynamical phases. The properties and advantages of the critical regime for life, computation, adaptability, evolvability, and robustness are reviewed. The guidance methods of RBNs can be used for engineering systems with the features of the critical regime, as well as for studying how natural selection evolved living systems, which are also critical.
引用
收藏
页码:181 / 191
页数:11
相关论文
共 50 条
  • [31] Self-Organization of Quasi-Random Copolymers
    L. V. Zherenkova
    S. K. Talitskikh
    P. G. Khalatur
    A. R. Khokhlov
    Doklady Physical Chemistry, 2002, 382 : 23 - 26
  • [32] Self-organization under the action of a random force
    M. L. Blank
    Doklady Mathematics, 2016, 93 : 33 - 36
  • [33] Exploring the Dynamic Organization of Random and Evolved Boolean Networks
    d'Addese, Gianluca
    Magri, Salvatore
    Serra, Roberto
    Villani, Marco
    ALGORITHMS, 2020, 13 (11) : 1 - 15
  • [34] A novel boolean self-organization mapping based on fuzzy geometrical expansion
    Chaudhari, NS
    Wang, D
    ICICS-PCM 2003, VOLS 1-3, PROCEEDINGS, 2003, : 1211 - 1215
  • [35] Self-organization of river networks to threshold states
    Talling, PJ
    WATER RESOURCES RESEARCH, 2000, 36 (04) : 1119 - 1128
  • [36] DYNAMICS OF SELF-ORGANIZATION IN COMPLEX ADAPTIVE NETWORKS
    DHUMIERES, D
    HUBERMAN, BA
    JOURNAL OF STATISTICAL PHYSICS, 1984, 34 (3-4) : 361 - 379
  • [37] Self-organization of activity in wireless sensor networks
    Davis, P
    Hasegawa, A
    Kadowaki, N
    Obana, S
    Proceedings of the 2004 Intelligent Sensors, Sensor Networks & Information Processing Conference, 2004, : 103 - 106
  • [38] Strategy of Self-organization in Sensors and Actuators Networks
    Romdhani, Bilel
    Barthel, Dominique
    Valois, Fabrice
    2010 IEEE 6TH INTERNATIONAL CONFERENCE ON WIRELESS AND MOBILE COMPUTING, NETWORKING AND COMMUNICATIONS (WIMOB), 2010, : 414 - 420
  • [39] Self-organization of a critical state on complex networks
    S. L. Ginzburg
    A. V. Nakin
    N. E. Savitskaya
    Journal of Experimental and Theoretical Physics, 2009, 109 : 1022 - 1031
  • [40] Self-organization of retrieval in connected neural networks
    Shimizu, T
    JOURNAL OF THE KOREAN PHYSICAL SOCIETY, 2002, 40 (06) : 1072 - 1076