Large-scale informatic analysis to algorithmically identify blood biomarkers of neurological damage

被引:10
作者
O'Connell, Grant C. [1 ]
Alder, Megan L. [1 ]
Smothers, Christine G. [1 ]
Chang, Julia H. C. [1 ]
机构
[1] Case Western Reserve Univ, Sch Nursing, Cleveland, OH 44106 USA
关键词
molecular diagnostics; stroke; multiple sclerosis; traumatic brain injury; Alzheimer's disease; TRAUMATIC BRAIN-INJURY; MYELIN BASIC-PROTEIN; CEREBROSPINAL-FLUID; ALZHEIMERS-DISEASE; ISCHEMIC-STROKE; EARLY-DIAGNOSIS; ACIDIC PROTEIN; EXPRESSION; SERUM; CSF;
D O I
10.1073/pnas.2007719117
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The identification of precision blood biomarkers which can accurately indicate damage to brain tissue could yield molecular diagnostics with the potential to improve how we detect and treat neurological pathologies. However, a majority of candidate blood biomarkers for neurological damage that are studied today are proteins which were arbitrarily proposed several decades before the advent of high-throughput omic techniques, and it is unclear whether they represent the best possible targets relative to the remainder of the human proteome. Here, we leveraged mRNA expression data generated from nearly 12,000 human specimens to algorithmically evaluate over 17,000 protein-coding genes in terms of their potential to produce blood biomarkers for neurological damage based on their expression profiles both across the body and within the brain. The circulating levels of proteins associated with the top-ranked genes were then measured in blood sampled from a diverse cohort of patients diagnosed with a variety of acute and chronic neurological disorders, including ischemic stroke, hemorrhagic stroke, traumatic brain injury, Alzheimer's disease, and multiple sclerosis, and evaluated for their diagnostic performance. Our analysis identifies several previously unexplored candidate blood biomarkers of neurological damage with possible clinical utility, many of which whose presence in blood is likely linked to specific cell-level pathologic processes. Furthermore, our findings also suggest that many frequently cited previously proposed blood biomarkers exhibit expression profiles which could limit their diagnostic efficacy.
引用
收藏
页码:20764 / 20775
页数:12
相关论文
共 64 条
  • [1] Missed Ischemic Stroke Diagnosis in the Emergency Department by Emergency Medicine and Neurology Services
    Arch, Allison E.
    Weisman, David C.
    Coca, Steven
    Nystrom, Karin V.
    Wira, Charles R., III
    Schindler, Joseph L.
    [J]. STROKE, 2016, 47 (03) : 668 - 673
  • [2] A CORRELATIVE TRIAD OF GADOLINIUM-DTPA MRI, EDSS, AND CSF-MBP IN RELAPSING MULTIPLE-SCLEROSIS PATIENTS TREATED WITH HIGH-DOSE INTRAVENOUS METHYLPREDNISOLONE
    BARKHOF, F
    FREQUIN, STFM
    HOMMES, OR
    LAMERS, K
    SCHELTENS, P
    VANGEEL, WJA
    VALK, J
    [J]. NEUROLOGY, 1992, 42 (01) : 63 - 67
  • [3] Serum GFAP and UCH-L1 for prediction of absence of intracranial injuries on head CT (ALERT-TBI): a multicentre observational study
    Bazarian, Jeffrey J.
    Biberthaler, Peter
    Welch, Robert D.
    Lewis, Lawrence M.
    Barzo, Pal
    Bogner-Flatz, Viktoria
    Brolinson, P. Gunnar
    Buki, Andras
    Chen, James Y.
    Christenson, Robert H.
    Hack, Dallas
    Huff, J. Stephen
    Johar, Sandeep
    Jordan, J. Dedrick
    Leidel, Bernd A.
    Lindner, Tobias
    Ludington, Elizabeth
    Okonkwo, David O.
    Ornato, Joseph
    Peacock, W. Frank
    Schmidt, Kara
    Tyndall, Joseph A.
    Vossough, Arastoo
    Jagoda, Andy S.
    [J]. LANCET NEUROLOGY, 2018, 17 (09) : 782 - 789
  • [4] COMPARTMENTS: unification and visualization of protein subcellular localization evidence
    Binder, Janos X.
    Pletscher-Frankild, Sune
    Tsafou, Kalliopi
    Stolte, Christian
    O'Donoghue, Sean I.
    Schneider, Reinhard
    Jensen, Lars Juhl
    [J]. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2014,
  • [5] Stroke Mimics Transported by Emergency Medical Services to a Comprehensive Stroke Center: The Magnitude of the Problem
    Briard, Joel Neves
    Zewude, Rahel T.
    Kate, Mahesh P.
    Rowe, Brian H.
    Buck, Brian
    Butcher, Ken
    Gioia, Laura C.
    [J]. JOURNAL OF STROKE & CEREBROVASCULAR DISEASES, 2018, 27 (10) : 2738 - 2745
  • [6] Blood Biomarkers for the Early Diagnosis of Stroke The Stroke-Chip Study
    Bustamante, Alejandro
    Lopez-Cancio, Elena
    Pich, Sara
    Penalba, Anna
    Giralt, Dolors
    Garcia-Berrocoso, Teresa
    Ferrer-Costa, Carles
    Gasull, Teresa
    Hernandez-Perez, Maria
    Millan, Monica
    Rubiera, Marta
    Cardona, Pedro
    Cano, Luis
    Quesada, Helena
    Terceno, Mikel
    Silva, Yolanda
    Castellanos, Mar
    Garces, Moises
    Reverte, Silvia
    Ustrell, Xavier
    Mares, Rafael
    Baiges, Joan Josep
    Serena, Joaquin
    Rubio, Francisco
    Salas, Eduardo
    Davalos, Antoni
    Montaner, Joan
    [J]. STROKE, 2017, 48 (09) : 2419 - +
  • [7] Body fluid biomarkers in multiple sclerosis
    Comabella, Manuel
    Montalban, Xavier
    [J]. LANCET NEUROLOGY, 2014, 13 (01) : 113 - 126
  • [8] A survey of human brain transcriptome diversity at the single cell level
    Darmanis, Spyros
    Sloan, Steven A.
    Zhang, Ye
    Enge, Martin
    Caneda, Christine
    Shuer, Lawrence M.
    Gephart, Melanie G. Hayden
    Barres, Ben A.
    Quake, Stephen R.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (23) : 7285 - 7290
  • [9] ISOLATION OF PGP 9.5, A NEW HUMAN NEURON-SPECIFIC PROTEIN DETECTED BY HIGH-RESOLUTION TWO-DIMENSIONAL ELECTROPHORESIS
    DORAN, JF
    JACKSON, P
    KYNOCH, PAM
    THOMPSON, RJ
    [J]. JOURNAL OF NEUROCHEMISTRY, 1983, 40 (06) : 1542 - 1547
  • [10] ACIDIC PROTEIN ISOLATED FROM FIBROUS ASTROCYTES
    ENG, LF
    VANDENHA.JJ
    BIGNAMI, A
    GERSTL, B
    [J]. BRAIN RESEARCH, 1971, 28 (02) : 351 - &