A numerical representation of DNA sequences and its applications

被引：0

作者：

Chen, Weiyang ^{[1
]}

Liao, Bo ^{[1
]}

Liu, Yanshu ^{[1
]}

Zhu, Wen ^{[1
]}

Su, Zhizhong ^{[1
]}

机构：

[1] Hunan Univ, Sch Comp & Commun, Changsha 410082, Hunan, Peoples R China

来源：

MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY | 2008年 / 60卷 / 02期

关键词：

D O I：

暂无

中图分类号：

O6 [化学];

学科分类号：

0703 ;

摘要：

We introduced a sort of numerical coding method of DNA sequences. Based on this representation, we can reduce a DNA sequence into three binary digit sequence. Associating with the proposed coding rules, we can judge the mutation between bases and make sequence alignment easily.

引用

页码：291 / 300

页数：10

共 17 条

[1] Similarity studies of DNA sequences using genetic methods [J].

Bielinska-Waz, Dorota ;

Waz, Piotr ;

Clark, Timothy .

CHEMICAL PHYSICS LETTERS, 2007, 445 (1-3) :68-73

[2] Distribution moments of 2D-graphs as descriptors of DNA sequences [J].

Bielinska-Waz, Dorota ;

Nowak, Wieslaw ;

Waz, Piotr ;

Nandy, Ashesh ;

Clark, Timothy .

CHEMICAL PHYSICS LETTERS, 2007, 443 (4-6) :408-413

[3] 2D-dynamic representation of DNA sequences [J].

Bielinska-Waz, Dorota ;

Clark, Timothy ;

Waz, Piotr ;

Nowak, Wieslaw ;

Nandy, Ashesh .

CHEMICAL PHYSICS LETTERS, 2007, 442 (1-3) :140-144

[4]

Huang GH, 2008, MATCH-COMMUN MATH CO, V59, P635

[5] Graphical approach to analyzing DNA sequences [J].

Liao, B ;

Ding, KQ .

JOURNAL OF COMPUTATIONAL CHEMISTRY, 2005, 26 (14) :1519-1523

[6] 3-D graphical representation of DNA sequences and their numerical characterization [J].

Liao, B ;

Wang, TM .

JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2004, 681 (1-3) :209-212

[7] A 2D graphical representation of DNA sequence [J].

Liao, B .

CHEMICAL PHYSICS LETTERS, 2005, 401 (1-3) :196-199

[8] Analysis of similarity/dis similarity of DNA sequences based on 3-D graphical representation [J].

Liao, B ;

Wang, TM .

CHEMICAL PHYSICS LETTERS, 2004, 388 (1-3) :195-200

[9] A 3D graphical representation of DNA sequences and its application [J].

Liao, Bo ;

Ding, Kequan .

THEORETICAL COMPUTER SCIENCE, 2006, 358 (01) :56-64

[10]

NANDY A, 1995, CURR SCI INDIA, V68, P75

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