Assessing protein disorder and induced folding

被引:362
作者
Receveur-Bréchot, V
Bourhis, JM
Uversky, VN
Canard, B
Longhi, S
机构
[1] CNRS, UMR 6098, AFMB, F-13288 Marseille 09, France
[2] Univ Aix Marseille 1, Marseille 09, France
[3] Univ Aix Marseille 2, Marseille 09, France
[4] Indiana Univ, Sch Med, Dept Biochem & Mol Biol, Indianapolis, IN 46202 USA
[5] Indiana Univ, Sch Med, Ctr Computat Biol & Bioinformat, Indianapolis, IN 46202 USA
关键词
protein disorder; induced folding; structure-function paradigm;
D O I
10.1002/prot.20750
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Intrinsically disordered proteins (IDPs) defy the structure-function paradigm as they fulfill essential biological functions while lacking well-defined secondary and tertiary structures. Conformational and spectroscopic analyses showed that IDPs do not constitute a uniform family, and can be divided into subfamilies as a function of their residual structure content. Residual intramolecular interactions are thought to facilitate binding to a partner and then induced folding. Comprehensive information about experimental approaches to investigate structural disorder and induced folding is still scarce. We herein provide hints to readily recognize features typical of intrinsic disorder and review the principal techniques to assess structural disorder and induced folding. We describe their theoretical principles and discuss their respective advantages and limitations. Finally, we point out the necessity of using different approaches and show how information can be broadened by the use of multiples techniques.
引用
收藏
页码:24 / 45
页数:22
相关论文
共 243 条
[31]   THERMODYNAMIC ANALYSIS OF MULTICOMPONENT SOLUTIONS [J].
CASASSA, EF ;
EISENBERG, H .
ADVANCES IN PROTEIN CHEMISTRY, 1964, 19 :287-395
[32]   Toward understanding tryptophan fluorescence in proteins [J].
Chen, Y ;
Barkley, MD .
BIOCHEMISTRY, 1998, 37 (28) :9976-9982
[33]   UV resonance Raman-selective amide vibrational enhancement: Quantitative methodology for determining protein secondary structure [J].
Chi, ZH ;
Chen, XG ;
Holtz, JSW ;
Asher, SA .
BIOCHEMISTRY, 1998, 37 (09) :2854-2864
[34]  
CHRISTENSEN H, 1994, MECHANISMS PROTEIN F, P55
[35]   STRUCTURE AND STABILITY OF THE MOLTEN GLOBULE STATE OF GUINEA-PIG ALPHA-LACTALBUMIN - A HYDROGEN-EXCHANGE STUDY [J].
CHYAN, CL ;
WORMALD, C ;
DOBSON, CM ;
EVANS, PA ;
BAUM, J .
BIOCHEMISTRY, 1993, 32 (21) :5681-5691
[36]   Prediction of unfolded segments in a protein sequence based on amino acid composition [J].
Coeytaux, K ;
Poupon, A .
BIOINFORMATICS, 2005, 21 (09) :1891-1900
[37]   SECONDARY STRUCTURE DETERMINATION IN PROTEINS FROM DEEP (192-223-NM) ULTRAVIOLET RAMAN-SPECTROSCOPY [J].
COPELAND, RA ;
SPIRO, TG .
BIOCHEMISTRY, 1987, 26 (08) :2134-2139
[38]   Uncovering the unfoldome: Enriching cell extracts for unstructured proteins by acid treatment [J].
Cortese, MS ;
Baird, JP ;
Uversky, VN ;
Dunker, AK .
JOURNAL OF PROTEOME RESEARCH, 2005, 4 (05) :1610-1618
[39]  
DAUGHDRILL GW, 2005, HDB PROTEIN FOLDING, V3, P271
[40]   Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators [J].
Demarest, SJ ;
Martinez-Yamout, M ;
Chung, J ;
Chen, HW ;
Xu, W ;
Dyson, HJ ;
Evans, RM ;
Wright, PE .
NATURE, 2002, 415 (6871) :549-553