Development and Characterization of a Novel Plug and Play Liquid Chromatography-Mass Spectrometry (LC-MS) Source That Automates Connections between the Capillary Trap, Column, and Emitter

被引:5
作者
Bereman, Michael S. [1 ]
Hsieh, Edward J. [1 ]
Corso, Thomas N. [2 ]
Van Pelt, Colleen K. [2 ]
MacCoss, Michael J. [1 ]
机构
[1] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA
[2] CorSolutions, Ithaca, NY 14850 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
ION-TRAP; DISSOCIATION; PROTEOMICS; ORBITRAP;
D O I
10.1074/mcp.O112.024893
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We report the development and characterization of a novel, vendor-neutral ultra-high pressure-compatible (similar to 10,000 p.s.i.) LC-MS source. This device is the first to make automated connections with user-packed capillary traps, columns, and capillary emitters. The source uses plastic rectangular inserts (referred to here as cartridges) where individual components (i.e. trap, column, or emitter) can be exchanged independent of one another in a plug and play manner. Automated robotic connections are made between the three cartridges using linear translation powered by stepper motors to axially compress each cartridge by applying a well controlled constant compression force to each commercial LC fitting. The user has the versatility to tailor the separation (e.g. the length of the column, type of stationary phase, and mode of separation) to the experimental design of interest in a cost-effective manner. The source is described in detail, and several experiments are performed to evaluate the robustness of both the system and the exchange of the individual trap and emitter cartridges. The standard deviation in the retention time of four targeted peptides from a standard digest interlaced with a soluble Caenorhabditis elegans lysate ranged between 3.1 and 5.3 s over 3 days of analyses. Exchange of the emitter cartridge was found to have an insignificant effect on the abundance of various peptides. In addition, the trap cartridge can be replaced with minimal effects on retention time (<20 s).
引用
收藏
页码:1701 / 1708
页数:8
相关论文
共 19 条
[1]   Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600) [J].
Andrews, Genna L. ;
Simons, Brigitte L. ;
Young, J. Bryce ;
Hawkridge, Adam M. ;
Muddiman, David C. .
ANALYTICAL CHEMISTRY, 2011, 83 (13) :5442-5446
[2]   Electron capture dissociation in a radio frequency ion trap [J].
Baba, T ;
Hashimoto, Y ;
Hasegawa, H ;
Hirabayashi, A ;
Waki, I .
ANALYTICAL CHEMISTRY, 2004, 76 (15) :4263-4266
[3]   Evaluation of Front-End Higher Energy Collision-Induced Dissociation on a Benchtop Dual-Pressure Linear Ion Trap Mass Spectrometer for Shotgun Proteomics [J].
Bereman, Michael S. ;
Canterbury, Jesse D. ;
Egertson, Jarrett D. ;
Horner, Julie ;
Remes, Philip M. ;
Schwartz, Jae ;
Zabrouskoy, Vlad ;
MacCoss, Michael J. .
ANALYTICAL CHEMISTRY, 2012, 84 (03) :1533-1539
[4]   Comparison between procedures using SDS for shotgun proteomic analyses of complex samples [J].
Bereman, Michael S. ;
Egertson, Jarrett D. ;
MacCoss, Michael J. .
PROTEOMICS, 2011, 11 (14) :2931-2935
[5]   Practical implications of some recent studies in electrospray ionization fundamentals [J].
Cech, NB ;
Enke, CG .
MASS SPECTROMETRY REVIEWS, 2001, 20 (06) :362-387
[6]   Integrated microfluidic device for mass spectrometry-based proteomics and its application to biomarker discovery programs [J].
Fortier, MH ;
Bonneil, E ;
Goodley, P ;
Thibault, P .
ANALYTICAL CHEMISTRY, 2005, 77 (06) :1631-1640
[7]   The Orbitrap: a new mass spectrometer [J].
Hu, QZ ;
Noll, RJ ;
Li, HY ;
Makarov, A ;
Hardman, M ;
Cooks, RG .
JOURNAL OF MASS SPECTROMETRY, 2005, 40 (04) :430-443
[8]  
Kiyonami R., 2012, 63546 THERM SCI
[9]   More sensitive and quantitative proteomic measurements using very low flow rate porous silica monolithic LC columns with electrospray ionization-mass spectrometry [J].
Luo, QZ ;
Tang, KQ ;
Yang, F ;
Elias, A ;
Shen, YF ;
Moore, RJ ;
Zhao, R ;
Hixson, KK ;
Rossie, SS ;
Smith, RD .
JOURNAL OF PROTEOME RESEARCH, 2006, 5 (05) :1091-1097
[10]   Skyline: an open source document editor for creating and analyzing targeted proteomics experiments [J].
MacLean, Brendan ;
Tomazela, Daniela M. ;
Shulman, Nicholas ;
Chambers, Matthew ;
Finney, Gregory L. ;
Frewen, Barbara ;
Kern, Randall ;
Tabb, David L. ;
Liebler, Daniel C. ;
MacCoss, Michael J. .
BIOINFORMATICS, 2010, 26 (07) :966-968