Genome-Wide Integration of Genetic and Genomic Studies of Atopic Dermatitis: Insights into Genetic Architecture and Pathogenesis

被引:10
作者
Chen, Yanxuan [1 ]
Chen, Wenyan [2 ]
机构
[1] Shenzhen Longhua Dist Cent Hosp, Dept Gen Med, Shenzhen, Peoples R China
[2] Shenzhen Bay Lab, Inst Syst & Phys Biol, Shenzhen, Peoples R China
关键词
SUSCEPTIBILITY LOCI; RISK-FACTORS; MENDELIAN RANDOMIZATION; GENOTYPE IMPUTATION; DIABETES-MELLITUS; CHILDHOOD ECZEMA; ASSOCIATION; DISEASE; CHILDREN; SLEEP;
D O I
10.1016/j.jid.2022.04.021
中图分类号
R75 [皮肤病学与性病学];
学科分类号
100206 ;
摘要
Atopic dermatitis (AD) is a common heterogeneous, chronic, itching, and inflammatory skin disease. Genetic studies have identified multiple AD susceptibility genes. However, the genetic architecture of AD has not been elucidated. In this study, we conducted a large-scale meta-analysis of AD (35,647 cases and 1,013,885 controls) to characterize the genetic basis of AD. The heritability of AD in different datasets varied from 0.6 to 7.1%. We identified 31 previously unreported genes by integrating multiomics data. Among the 31 genes, MCL1 was identified as a potential treatment target for AD by mediating gene-drug interactions. Tissue enrichment analyses and phenome-wide association study provided strong support for the role of the hemic and immune systems in AD. Across 1,207 complex traits and diseases, genetic correlations indicated that AD shared links with multiple respiratory phenotypes. The phenome-wide Mendelian randomization analysis (Mendelian randomization-phenome-wide association study) revealed that the age of onset of diabetes exhibited a positive causal effect on AD (inverse-variance weighted b = 0.39, SEM = 0.09, P = 2.77 x 10(-5)). Overall, these results provide important insights into the genetic architecture of AD and will lead to a more thorough and complete understanding of the molecular mechanisms underlying AD.
引用
收藏
页码:2958 / +
页数:18
相关论文
共 88 条
[1]   Novel locus for atopic dermatitis in African Americans and replication in European Americans [J].
Almoguera, Berta ;
Vazquez, Lyam ;
Mentch, Frank ;
March, Michael E. ;
Connolly, John J. ;
Peissig, Peggy L. ;
Linneman, James G. ;
del Carmen Plaza-Seron, Maria ;
Pino-Yanes, Maria ;
Burchard, Esteban G. ;
Brilliant, Murray ;
Sleiman, Patrick ;
Hakonarson, Hakon .
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2019, 143 (03) :1229-+
[2]   Fast set-based association analysis using summary data from GWAS identifies novel gene loci for human complex traits [J].
Bakshi, Andrew ;
Zhu, Zhihong ;
Vinkhuyzen, Anna A. E. ;
Hill, W. David ;
Mcrae, Allan F. ;
Visscher, Peter M. ;
Yang, Jian .
SCIENTIFIC REPORTS, 2016, 6
[3]   Integrating predicted transcriptome from multiple tissues improves association detection [J].
Barbeira, Alvaro N. ;
Pividori, Milton D. ;
Zheng, Jiamao ;
Wheeler, Heather E. ;
Nicolae, Dan L. ;
Im, Hae Kyung .
PLOS GENETICS, 2019, 15 (01)
[4]   Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics [J].
Barbeira, Alvaro N. ;
Dickinson, Scott P. ;
Bonazzola, Rodrigo ;
Zheng, Jiamao ;
Wheeler, Heather E. ;
Torres, Jason M. ;
Torstenson, Eric S. ;
Shah, Kaanan P. ;
Garcia, Tzintzuni ;
Edwards, Todd L. ;
Stahl, Eli A. ;
Huckins, Laura M. ;
Nicolae, Dan L. ;
Cox, Nancy J. ;
Im, Hae Kyung .
NATURE COMMUNICATIONS, 2018, 9
[5]   Disease severity, scratching, and sleep quality in patients with atopic dermatitis [J].
Bender, Bruce G. ;
Ballard, Robert ;
Canono, Beth ;
Murphy, James R. ;
Leung, Donald Y. M. .
JOURNAL OF THE AMERICAN ACADEMY OF DERMATOLOGY, 2008, 58 (03) :415-420
[6]   Replicated methylation changes associated with eczema herpeticum and allergic response [J].
Boorgula, Meher Preethi ;
Taub, Margaret A. ;
Rafaels, Nicholas ;
Daya, Michelle ;
Campbell, Monica ;
Chavan, Sameer ;
Shetty, Aniket ;
Cheadle, Chris ;
Barkataki, Sangjucta ;
Fan, Jinshui ;
David, Gloria ;
Beaty, Terri H. ;
Ruczinski, Ingo ;
Hanifin, Jon ;
Schneider, Lynda C. ;
Gallo, Richard L. ;
Paller, Amy S. ;
Beck, Lisa A. ;
Leung, Donald Y. ;
Mathias, Rasika A. ;
Barnes, Kathleen C. .
CLINICAL EPIGENETICS, 2019, 11 (01)
[7]   Mendelian randomization with invalid instruments: effect estimation and bias detection through Egger regression [J].
Bowden, Jack ;
Smith, George Davey ;
Burgess, Stephen .
INTERNATIONAL JOURNAL OF EPIDEMIOLOGY, 2015, 44 (02) :512-525
[8]   The role of interleukin-2 during homeostasis and activation of the immune system [J].
Boyman, Onur ;
Sprent, Jonathan .
NATURE REVIEWS IMMUNOLOGY, 2012, 12 (03) :180-190
[9]   Assessment of a causal relationship between body mass index and atopic dermatitis [J].
Budu-Aggrey, Ashley ;
Watkins, Sarah H. ;
Brumpton, Ben ;
Loset, Mari ;
Tyrrell, Jess ;
Modalsli, Ellen H. ;
Vie, Gunnhild Aberge ;
Palmer, Tom ;
Fritsche, Lars G. ;
Nielsen, Jonas Bille ;
Romundstad, Pal Richard ;
Smith, George Davey ;
Asvold, Bjorn Olav ;
Paternoster, Lavinia ;
Brown, Sara J. .
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2021, 147 (01) :400-403
[10]   LD Score regression distinguishes confounding from polygenicity in genome-wide association studies [J].
Bulik-Sullivan, Brendan K. ;
Loh, Po-Ru ;
Finucane, Hilary K. ;
Ripke, Stephan ;
Yang, Jian ;
Patterson, Nick ;
Daly, Mark J. ;
Price, Alkes L. ;
Neale, Benjamin M. .
NATURE GENETICS, 2015, 47 (03) :291-+