Direct Prediction of NMR Residual Dipolar Couplings from the Primary Sequence of Unfolded Proteins

被引:15
作者
Huang, Jie-rong [1 ]
Ozenne, Valery [1 ]
Jensen, Malene Ringkjobing [1 ]
Blackledge, Martin [1 ]
机构
[1] Inst Biol Struct Jean Pierre Ebel, CNRS CEA UJF UMR 5075, F-38027 Grenoble, France
关键词
conformational sampling; intrinsic disorder; NMR spectroscopy; proteins; residual dipolar couplings; INTRINSICALLY DISORDERED PROTEINS; UREA-DENATURED UBIQUITIN; LONG-RANGE ORDER; UNSTRUCTURED PROTEINS; ALPHA-SYNUCLEIN; NATIVE-LIKE; CONFORMATIONS; STATE; ENSEMBLE; SCATTERING;
D O I
10.1002/anie.201206585
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Conformational analysis: An approach to the prediction of RDCs from disordered protein chains, integrating the effect of nearest neighbors and the alignment characteristics of the statistical coil, is reported. NMR residual dipolar couplings (RDC) are sensitive probes of conformational sampling in unfolded proteins (see picture). Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
引用
收藏
页码:687 / 690
页数:4
相关论文
共 34 条
[1]   Defining long-range order and local disorder in native α-synuclein using residual dipolar couplings [J].
Bernadó, P ;
Bertoncini, CW ;
Griesinger, C ;
Zweckstetter, M ;
Blackledge, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (51) :17968-17969
[2]   A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering [J].
Bernadó, P ;
Blanchard, L ;
Timmins, P ;
Marion, D ;
Ruigrok, RWH ;
Blackledge, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (47) :17002-17007
[3]   Amino acid bulkiness defines the local conformations and dynamics of natively unfolded α-synuclein and tau [J].
Cho, Min-Kyu ;
Kim, Hai-Young ;
Bernado, Pau ;
Fernandez, Claudio O. ;
Blackledge, Martin ;
Zweckstetter, Markus .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (11) :3032-+
[4]   Intrinsic disorder and protein function [J].
Dunker, AK ;
Brown, CJ ;
Lawson, JD ;
Iakoucheva, LM ;
Obradovic, Z .
BIOCHEMISTRY, 2002, 41 (21) :6573-6582
[5]   Intrinsically unstructured proteins and their functions [J].
Dyson, HJ ;
Wright, PE .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2005, 6 (03) :197-208
[6]   Coupling of folding and binding for unstructured proteins [J].
Dyson, HJ ;
Wright, PE .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2002, 12 (01) :54-60
[7]   Biophysical characterization of intrinsically disordered proteins [J].
Eliezer, David .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2009, 19 (01) :23-30
[8]   Short-range, long-range and transition state interactions in the denatured state of ACBP from residual dipolar couplings [J].
Fieber, W ;
Kristjansdottir, S ;
Poulsen, FM .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 339 (05) :1191-1199
[9]   Residual dipolar couplings measured in unfolded proteins are sensitive to amino-acid-specific geometries as well as local conformational sampling [J].
Huang, Jie-rong ;
Gentner, Martin ;
Vajpai, Navratna ;
Grzesiek, Stephan ;
Blackledge, Martin .
BIOCHEMICAL SOCIETY TRANSACTIONS, 2012, 40 :989-U338
[10]   Sequence-Specific Mapping of the Interaction between Urea and Unfolded Ubiquitin from Ensemble Analysis of NMR and Small Angle Scattering Data [J].
Huang, Jie-rong ;
Gabel, Frank ;
Jensen, Malene Ringkjobing ;
Grzesiek, Stephan ;
Blackledge, Martin .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (09) :4429-4436