Current practice of liquid chromatography-mass spectrometry in metabolomics and metabonomics

被引:314
作者
Gika, Helen G. [1 ]
Theodoridis, Georgios A. [2 ]
Plumb, Robert S. [3 ]
Wilson, Ian D. [3 ]
机构
[1] Aristotle Univ Thessaloniki, Dept Chem Engn, Thessaloniki 54124, Greece
[2] Aristotle Univ Thessaloniki, Dept Chem, Thessaloniki 54124, Greece
[3] Univ London Imperial Coll Sci Technol & Med, Fac Med, Dept Surg & Canc, Sect Computat & Syst Med, London SW7 2AY, England
关键词
Metabolomics; Metabonomics; Disease biomarker discovery; LC-MS; Metabolic profiling; HUMAN URINE; HYDROPHILIC INTERACTION; UPLC-MS; TOF-MS; QUANTITATIVE-ANALYSIS; METABOLITE PROFILES; SAMPLE PREPARATION; CANCER-DETECTION; SYSTEMS BIOLOGY; HUMAN PLASMA;
D O I
10.1016/j.jpba.2013.06.032
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Based on publication and citation numbers liquid chromatography (LC-MS) has become the major analytical technology in the field of global metabolite profiling. This dominance reflects significant investments from both the research community and instrument manufacturers. Here an overview of the approaches taken for LC-MS-based metabolomics research is given, describing critical steps in the realisation of such studies: study design and its needs, specific technological problems to be addressed and major obstacles in data treatment and biomarker identification. The current state of the art for LC-MS-based analysis in metabonomics/metabolomics is described including recent developments in liquid chromatography, mass spectrometry and data treatment as these are applied in metabolomics underlining the challenges, limitations and prospects for metabolomics research. Examples of the application of metabolite profiling in the life sciences focusing on disease biomarker discovery are highlighted. In addition, new developments and future prospects are described. (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:12 / 25
页数:14
相关论文
共 118 条
[1]   Genome-wide association studies with metabolomics [J].
Adamski, Jerzy .
GENOME MEDICINE, 2012, 4
[2]   What can metabolomics learn from genomics and proteomics? [J].
Arita, Masanori .
CURRENT OPINION IN BIOTECHNOLOGY, 2009, 20 (06) :610-615
[3]   High throughput and exhaustive analysis of diverse lipids by using supercritical fluid chromatography-mass spectrometry for metabolomics [J].
Bamba, Takeshi ;
Shimonishi, Naruto ;
Matsubara, Atsuki ;
Hirata, Kazumasa ;
Nakazawa, Yoshihisa ;
Kobayashi, Akio ;
Fukusaki, Eiichiro .
JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 2008, 105 (05) :460-469
[4]   Metabolic profiling of lipids by supercritical fluid chromatography/mass spectrometry [J].
Bamba, Takeshi ;
Lee, Jae Won ;
Matsubara, Atsuki ;
Fukusaki, Eiichiro .
JOURNAL OF CHROMATOGRAPHY A, 2012, 1250 :212-219
[5]   Large-scale human metabolomics studies: A strategy for data (pre-) processing and validation [J].
Bijlsma, S ;
Bobeldijk, L ;
Verheij, ER ;
Ramaker, R ;
Kochhar, S ;
Macdonald, IA ;
van Ommen, B ;
Smilde, AK .
ANALYTICAL CHEMISTRY, 2006, 78 (02) :567-574
[6]   Controlled protein precipitation in combination with chip-based nanospray infusion mass spectrometry. An approach for metabolomics profiling of plasma [J].
Boernsen, KO ;
Gatzek, S ;
Imbert, G .
ANALYTICAL CHEMISTRY, 2005, 77 (22) :7255-7264
[7]   Investigation of Human Blood Plasma Sample Preparation for Performing Metabolomics Using Ultrahigh Performance Liquid Chromatography/Mass Spectrometry [J].
Bruce, Stephen J. ;
Tavazzi, Isabelle ;
Parisod, Veronique ;
Rezzi, Serge ;
Kochhar, Sunil ;
Guy, Philippe A. .
ANALYTICAL CHEMISTRY, 2009, 81 (09) :3285-3296
[8]   Fecal metabolome profiling of liver cirrhosis and hepatocellular carcinoma patients by ultra performance liquid chromatography-mass spectrometry [J].
Cao, Hongcui ;
Huang, Haijun ;
Xu, Wei ;
Chen, Deying ;
Yu, Jiong ;
Li, Jun ;
Li, Lanjuan .
ANALYTICA CHIMICA ACTA, 2011, 691 (1-2) :68-75
[9]   A metabolomic approach to the evaluation of the origin of extra virgin olive oil: A convenient statistical treatment of mass spectrometric analytical data [J].
Cavaliere, Brunella ;
De Nino, Antonio ;
Hayet, Fourati ;
Lazez, Aida ;
Macchione, Barbara ;
Moncef, Cossentini ;
Perri, Enzo ;
Sindona, Giovanni ;
Tagarelli, Antonio .
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2007, 55 (04) :1454-1462
[10]   Metabonomic study of aristolochic acid-induced nephrotoxicity in rats [J].
Chen, MJ ;
Su, MM ;
Zhao, LP ;
Jiang, J ;
Liu, P ;
Cheng, JY ;
Lai, YJ ;
Liu, YM ;
Jia, W .
JOURNAL OF PROTEOME RESEARCH, 2006, 5 (04) :995-1002