Complete genome sequence and phylogenetic position of the Bacillus cereus group phage JBP901

被引：5
作者：
Asare, Paul Tetteh [1 ]
Ryu, Sangryeol [2 ,3 ]
Kim, Kwang-Pyo [1 ]
机构：
[1] Chonbuk Natl Univ, Coll Agr & Life Sci, Dept Food Sci & Technol, Jeonju 561756, Jeollabuk Do, South Korea
[2] Seoul Natl Univ, Ctr Agr Biomat, Dept Agr Biotechnol, Dept Food & Anim Biotechnol, Seoul, South Korea
[3] Seoul Natl Univ, Res Inst Agr & Life Sci, Seoul, South Korea
来源：
ARCHIVES OF VIROLOGY | 2015年 / 160卷 / 09期
关键词：
GENETIC DIVERSITY; BACTERIOPHAGE; PREVALENCE; STRAINS; PROFILES; PRODUCTS; KOREA; RICE; SPO1;
D O I：
10.1007/s00705-015-2485-0
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
Bacteriophage JBP901, isolated from fermented food, is specific for Bacillus cereus group species and exhibits a broad host spectrum among a large number of B. cereus isolates. Genome sequence analysis revealed a linear 159,492-bp genome with overall G+C content of 39.7 mol%, and 201 ORFs. The presence of a putative methylase, the large number of tRNAs, and the large number of nucleotide-metabolism- and replication-related genes in JBP901 reflects its broad lytic capacity. Most of the ORFs showed a high degree of similarity to Bcp1, Bc431v3 and BCP78, and various comparative genomics analyses also consistently clustered JBP901 with orphan (unclassified) Bacillus phages in the subfamily Spounavirinae of the family Myoviridae, supporting the presence of a distinguishable group in the subfamily.
引用
收藏
页码：2381 / 2384
页数：4
相关论文
共 34 条
  • [1] INCIDENCE OF BACILLUS-CEREUS IN MILK AND SOME MILK-PRODUCTS
    AHMED, AAH
    MOUSTAFA, MK
    MARTH, EH
    [J]. JOURNAL OF FOOD PROTECTION, 1983, 46 (02) : 126 - 128
  • [2] BASIC LOCAL ALIGNMENT SEARCH TOOL
    ALTSCHUL, SF
    GISH, W
    MILLER, W
    MYERS, EW
    LIPMAN, DJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
  • [3] [Anonymous], 2012, Molecular Cloning: A Laboratory Manual
  • [4] The RAST server: Rapid annotations using subsystems technology
    Aziz, Ramy K.
    Bartels, Daniela
    Best, Aaron A.
    DeJongh, Matthew
    Disz, Terrence
    Edwards, Robert A.
    Formsma, Kevin
    Gerdes, Svetlana
    Glass, Elizabeth M.
    Kubal, Michael
    Meyer, Folker
    Olsen, Gary J.
    Olson, Robert
    Osterman, Andrei L.
    Overbeek, Ross A.
    McNeil, Leslie K.
    Paarmann, Daniel
    Paczian, Tobias
    Parrello, Bruce
    Pusch, Gordon D.
    Reich, Claudia
    Stevens, Rick
    Vassieva, Olga
    Vonstein, Veronika
    Wilke, Andreas
    Zagnitko, Olga
    [J]. BMC GENOMICS, 2008, 9 (1)
  • [5] Extensive host range determination and improved efficacy of the bacteriophage JBP901 in the presence of divalent cations for control of Bacillus cereus in Cheonggukjang
    Bandara, Nadeeka
    Kim, Chyeon Hyeon
    Kim, Kwang-Pyo
    [J]. FOOD SCIENCE AND BIOTECHNOLOGY, 2014, 23 (02) : 499 - 504
  • [6] Bacillus cereus, a Volatile Human Pathogen
    Bottone, Edward J.
    [J]. CLINICAL MICROBIOLOGY REVIEWS, 2010, 23 (02) : 382 - +
  • [7] Identifying bacterial genes and endosymbiont DNA with Glimmer
    Delcher, Arthur L.
    Bratke, Kirsten A.
    Powers, Edwin C.
    Salzberg, Steven L.
    [J]. BIOINFORMATICS, 2007, 23 (06) : 673 - 679
  • [8] Genome sequence and analysis of a broad-host range lytic bacteriophage that infects the Bacillus cereus group
    El-Arabi, Tarek F.
    Griffiths, Mansel W.
    She, Yi-Min
    Villegas, Andre
    Lingohr, Erika J.
    Kropinski, Andrew M.
    [J]. VIROLOGY JOURNAL, 2013, 10
  • [9] Bacillus cereus and its food poisoning toxins
    Granum, PE
    Lund, T
    [J]. FEMS MICROBIOLOGY LETTERS, 1997, 157 (02) : 223 - 228
  • [10] Enterotoxigenic profiles of food-poisoning and food-borne Bacillus cereus strains
    Guinebretière, MH
    Broussolle, V
    Nguyen-The, C
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2002, 40 (08) : 3053 - 3056
1234