Exome sequencing: an efficient diagnostic tool for complex neurodegenerative disorders

被引:25
作者
Hammer, M. B. [1 ,2 ]
Eleuch-Fayache, G. [1 ]
Gibbs, J. R. [2 ,3 ,4 ]
Arepalli, S. K. [2 ]
Chong, S. B. [2 ]
Sassi, C. [2 ,3 ,4 ]
Bouhlal, Y. [5 ]
Hentati, F. [1 ]
Amouri, R. [1 ]
Singleton, A. B. [2 ]
机构
[1] Natl Inst Neurol, Dept Mol Neurobiol & Neuropathol, Tunis, Tunisia
[2] NIA, Mol Genet Sect, Neurogenet Lab, NIH, Bethesda, MD 20892 USA
[3] UCL, Reta Lilla Weston Labs, Inst Neurol, London, England
[4] UCL, Dept Mol Neurosci, Inst Neurol, London, England
[5] UCSF, Inst Human Genet, San Francisco, CA USA
基金
美国国家卫生研究院;
关键词
APOB; ataxia; exome sequencing; mutation; SACS; SPG11; RECESSIVE SPASTIC ATAXIA; CHARLEVOIX-SAGUENAY; HEREDITARY ATAXIAS; CORPUS-CALLOSUM; HYPERTRIGLYCERIDEMIA; CLASSIFICATION; PARAPLEGIAS; SPG11;
D O I
10.1111/j.1468-1331.2012.03883.x
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Background and purpose: Autosomal recessive cerebellar ataxia (ARCA) comprises a large and heterogeneous group of neurodegenerative disorders. We studied three families diagnosed with ARCA. Methods: To determine the gene lesions responsible for their disorders, we performed high-density single-nucleotide polymorphism genotyping and exome sequencing. Results: We identified a new mutation in the SACS gene and a known mutation in SPG11. Notably, we also identified a homozygous variant in APOB, a gene previously associated with ataxia. Conclusions: These findings demonstrate that exome sequencing is an efficient and direct diagnostic tool for identifying the causes of complex and genetically heterogeneous neurodegenerative diseases, early-stage disease or cases with limited clinical data.
引用
收藏
页码:486 / 492
页数:7
相关论文
共 22 条
[1]   AUTOSOMAL RECESSIVE SPASTIC ATAXIA OF CHARLEVOIX-SAGUENAY [J].
BOUCHARD, JP ;
BARBEAU, A ;
BOUCHARD, R ;
BOUCHARD, RW .
CANADIAN JOURNAL OF NEUROLOGICAL SCIENCES, 1978, 5 (01) :61-69
[2]  
Bouhlal Y, 2005, Acta Myol, V24, P155
[3]   Autosomal recessive spastic ataxia of Charlevoix-Saguenay: An overview [J].
Bouhlal, Yosr ;
Amouri, Rim ;
El Euch-Fayeche, Ghada ;
Hentati, Faycal .
PARKINSONISM & RELATED DISORDERS, 2011, 17 (06) :418-422
[4]   A Novel SACS Gene Mutation in a Tunisian Family [J].
Bouhlal, Yosr ;
El Euch-Fayeche, Ghada ;
Hentati, Faycal ;
Amouri, Rim .
JOURNAL OF MOLECULAR NEUROSCIENCE, 2009, 39 (03) :333-336
[5]   Hereditary spastic paraplegia with mental impairment and thin corpus callosum in Tunisia - SPG11, SPG15, and further genetic heterogeneity [J].
Boukhris, Amir ;
Stevanin, Giovanni ;
Feki, Imed ;
Denis, Elodie ;
Elleuch, Nizar ;
Miladi, Mohamed Imed ;
Truchetto, Jeremy ;
Denora, Paola ;
Belal, Samir ;
Mhiri, Chokri ;
Brice, Alexis .
ARCHIVES OF NEUROLOGY, 2008, 65 (03) :393-402
[6]   The variant call format and VCFtools [J].
Danecek, Petr ;
Auton, Adam ;
Abecasis, Goncalo ;
Albers, Cornelis A. ;
Banks, Eric ;
DePristo, Mark A. ;
Handsaker, Robert E. ;
Lunter, Gerton ;
Marth, Gabor T. ;
Sherry, Stephen T. ;
McVean, Gilean ;
Durbin, Richard .
BIOINFORMATICS, 2011, 27 (15) :2156-2158
[7]   A pathogenetic classification of hereditary ataxias: Is the time ripe? [J].
De Michele, G ;
Coppola, G ;
Cocozza, S ;
Filla, A .
JOURNAL OF NEUROLOGY, 2004, 251 (08) :913-922
[8]   Screening of ARHSP-TCC Patients Expands the Spectrum of SPG11 Mutations and Includes a Large Scale Gene Deletion [J].
Denora, Paola S. ;
Schlesinger, David ;
Casali, Carlo ;
Kok, Fernando ;
Tessa, Alessandra ;
Boukhris, Amir ;
Azzedine, Hamid ;
Dotti, Maria Teresa ;
Bruno, Claudio ;
Truchetto, Jeremy ;
Biancheri, Roberta ;
Fedirko, Estelle ;
Di Rocco, Maja ;
Bueno, Clarissa ;
Malandrini, Alessandro ;
Battini, Roberta ;
Sickl, Elisabeth ;
de Leva, Maria Fulvia ;
Boespflug-Tanguy, Odile ;
Silvestri, Gabriella ;
Simonati, Alessandro ;
Said, Edith ;
Ferbert, Andreas ;
Criscuolo, Chiara ;
Heinimann, Karl ;
Modoni, Anna ;
Weber, Peter ;
Palmeri, Silvia ;
Plasilova, Martina ;
Pauri, Flavia ;
Cassandrini, Denise ;
Battisti, Carla ;
Pini, Antonella ;
Tosetti, Michela ;
Hauser, Erwin ;
Masciullo, Marcella ;
Di Fabio, Roberto ;
Piccolo, Francesca ;
Denis, Elodie ;
Cioni, Giovanni ;
Massa, Roberto ;
Della Giustina, Elvio ;
Calabrese, Olga ;
Melone, Marina A. B. ;
De Michele, Giuseppe ;
Federico, Antonio ;
Bertini, Enrico ;
Durr, Alexandra ;
Brockmann, Knut ;
van der Knaap, Marjo S. .
HUMAN MUTATION, 2009, 30 (03) :E500-E519
[9]   Hereditary spastic paraplegias: an update [J].
Depienne, Christel ;
Stevanin, Giovanni ;
Brice, Alexis ;
Durr, Alexandra .
CURRENT OPINION IN NEUROLOGY, 2007, 20 (06) :674-680
[10]  
HARDING AE, 1983, LANCET, V1, P1151