Local Structure and Dynamics of Hydration Water in Intrinsically Disordered Proteins

被引:41
|
作者
Rani, Pooja [1 ]
Biswas, Parbati [1 ]
机构
[1] Univ Delhi, Dept Chem, Delhi 110007, India
关键词
MOLECULAR-DYNAMICS; NEUTRON-SCATTERING; CRYSTAL-STRUCTURES; ALPHA-SYNUCLEIN; FORCE-FIELDS; LIQUID WATER; SIMULATIONS; RELAXATION; RESOLUTION; SYSTEMS;
D O I
10.1021/jp511961c
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Hydration water around protein surface plays a key role in structure, folding and dynamics of proteins. Intrinsically disordered proteins lack secondary and/or tertiary structure in their native state. Thus, characterizing the local structure and dynamics of hydration water around disordered proteins is challenging for both experimentalists and theoreticians. The local structure, orientation and dynamics of hydration water in the vicinity of intrinsically disordered proteins is investigated through molecular dynamics simulations. The analysis of the hydration capacity reveals that the disordered proteins have much larger binding capacity for hydration water than globular proteins. The surface and radial distribution of water molecules around the disordered proteins depict a similar trend. The local structure of the hydration water evaluated in terms of the tetrahedral order parameter, shows a higher order among the water molecules surrounding disordered proteins/regions. The residence time of water molecules clearly exhibits slow dynamics of hydration water around the surface of disordered proteins/regions as compared to globular proteins. The orientation of water molecules is found to be distinctly different for ordered and disordered proteins/regions. This analysis provides a better insight into the structure around disordered proteins. and dynamics of hydration water
引用
收藏
页码:10858 / 10867
页数:10
相关论文
共 50 条
  • [1] Diffusion of Hydration Water around Intrinsically Disordered Proteins
    Rani, Pooja
    Biswas, Parbati
    JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (42) : 13262 - 13270
  • [2] Structure and Dynamics of Intrinsically Disordered Proteins
    Fu, Biao
    Vendruscolo, Michele
    INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 35 - 48
  • [3] Hydration Water Distribution around Intrinsically Disordered Proteins
    Aggarwal, Leena
    Biswas, Parbati
    JOURNAL OF PHYSICAL CHEMISTRY B, 2018, 122 (15) : 4206 - 4218
  • [4] Solvent-dependent segmental dynamics in intrinsically disordered proteins
    Salvi, Nicola
    Abyzov, Anton
    Blackledge, Martin
    SCIENCE ADVANCES, 2019, 5 (06):
  • [5] Lipidation Alters the Structure and Hydration of Myristoylated Intrinsically Disordered Proteins
    Ji, Jingjing
    Hossain, Md Shahadat
    Krueger, Emily N.
    Zhang, Zhe
    Nangia, Shivangi
    Carpentier, Britnie
    Martel, Mae
    Nangia, Shikha
    Mozhdehi, Davoud
    BIOMACROMOLECULES, 2023, 24 (03) : 1244 - 1257
  • [6] Intrinsically Disordered Proteins: Methods for Structure and Dynamics Studies
    Showalter, Scott A.
    EMAGRES, 2014, 3 (02): : 181 - 189
  • [7] Investigating Intrinsically Disordered Proteins With Brownian Dynamics
    Ahn, Surl-Hee
    Huber, Gary A.
    McCammon, J. Andrew
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 9
  • [8] Sequence-Dependent Backbone Dynamics of Intrinsically Disordered Proteins
    Dey, Souvik
    MacAinsh, Matthew
    Zhou, Huan-Xiang
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2022, : 6310 - 6323
  • [9] Dynamical Coupling of Intrinsically Disordered Proteins and Their Hydration Water: Comparison with Folded Soluble and Membrane Proteins
    Gallat, F. -X.
    Laganowsky, A.
    Wood, K.
    Gabel, F.
    van Eijck, L.
    Wuttke, J.
    Moulin, M.
    Haertlein, M.
    Eisenberg, D.
    Colletier, J. -P.
    Zaccai, G.
    Weik, M.
    BIOPHYSICAL JOURNAL, 2012, 103 (01) : 129 - 136
  • [10] Translational diffusion of hydration water correlates with functional motions in folded and intrinsically disordered proteins
    Schiro, Giorgio
    Fichou, Yann
    Gallat, Francois-Xavier
    Wood, Kathleen
    Gabel, Frank
    Moulin, Martine
    Haertlein, Michael
    Heyden, Matthias
    Colletier, Jacques-Philippe
    Orecchini, Andrea
    Paciaroni, Alessandro
    Wuttke, Joachim
    Tobias, Douglas J.
    Weik, Martin
    NATURE COMMUNICATIONS, 2015, 6