Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering (vol 3, 43, 2015)

被引：2
|
作者：
Franzen, Oscar [1 ]
Hu, Jianzhong [1 ]
Bao, Xiuliang [2 ]
Itzkowitz, Steven H. [2 ]
Peter, Inga [1 ]
Bashir, Ali [1 ]
机构：
[1] Icahn Sch Med Mt Sinai, Dept Genet & Genom Sci, New York, NY 10029 USA
[2] Icahn Sch Med Mt Sinai, Dept Med, Div Gastroenterol, New York, NY 10029 USA
来源：
MICROBIOME | 2015年 / 3卷
关键词：
D O I：
10.1186/s40168-015-0123-4
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
引用
收藏
页数：1
相关论文
共 50 条
  • [31] Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing
    Oktavitri, Nur Indradewi
    Kim, Jong-Oh
    Kim, Kyunghoi
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (27):
  • [32] Characterising the allergic fungal rhinosinusitis microenvironment using full-length 16S rRNA gene amplicon sequencing and fungal ITS sequencing
    Connell, J. T.
    Bouras, G.
    Yeo, K.
    Fenix, K.
    Cooksley, C.
    Bassiouni, A.
    Vreugde, S.
    Wormald, P. J.
    Psaltis, A. J.
    ALLERGY, 2024, 79 (11) : 3082 - 3094
  • [33] Superior resolution characterisation of microbial diversity in anaerobic digesters using full-length 16S rRNA gene amplicon sequencing
    Lam, Theo Y. C.
    Mei, Ran
    Wu, Zhuoying
    Lee, Patrick K. H.
    Liu, Wen-Tso
    Lee, Po-Heng
    WATER RESEARCH, 2020, 178
  • [34] Microbial Diversity Analysis of Sediment from Yeosu New Harbor of South Korea Using 16S rRNA Gene Amplicon Sequencing
    Lee, Junho
    Jeong, Ilwon
    Kim, Jong-Oh
    Kim, Kyunghoi
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (02):
  • [35] Microbial Diversity Analysis of Sediment from Nakdong River Estuary in the Republic of Korea Using 16S rRNA Gene Amplicon Sequencing
    Kim, Kyunghoi
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2018, 7 (14):
  • [36] Endometrial microbiota and pregnancy outcome of IVF patients in Japan: an analysis using species level resolution 16S rRNA gene amplicon sequencing
    Kyono, K.
    Hashimoto, T.
    Okuyama, N.
    Nagai, Y.
    Sakuraba, Y.
    HUMAN REPRODUCTION, 2019, 34 : 120 - 120
  • [37] An insight into the fecal microbiota composition in Romanian patients with ankylosing spondylitis using high-throughput 16S rRNA gene amplicon sequencing
    Oprea, Mihaela
    Cristea, Daniela
    Dinu, Sorin
    Ciontea, Simona Adriana
    Bojinca, Violeta Claudia
    Predeteanu, Denisa
    Balanescu, Andra Rodica
    Usein, Codruta Romanita
    REVISTA ROMANA DE MEDICINA DE LABORATOR, 2022, 30 (01): : 49 - 61
  • [38] Short-read next-generation sequencing of 16s rRNA gene amplicons for characterizing amplicon sequence variants (ASVs) and determination of gene copy numbers using ion Torrent platform
    Jogi, Mukesh K.
    Shikha, Sristy
    Singh, Pushpendra
    Shreyansh, Aranya
    Paul, Aranya
    Nema, Vijay
    Shankar, Akshay
    Sajid, Mohammad
    Kumar, Anil
    Kashayap, Brijendra K.
    Bharadwaj, Mausumi
    Singh, Shalini
    Kumar, Pramod
    NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS, 2025,
  • [39] Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification (vol 5, 16498, 2015)
    Ziesemer, Kirsten A.
    Mann, Allison E.
    Sankaranarayanan, Krithivasan
    Schroeder, Hannes
    Ozga, Andrew T.
    Brandt, Bernd W.
    Zaura, Egija
    Waters-Rist, Andrea
    Hoogland, Menno
    Salazar-Garcia, Domingo C.
    Aldenderfer, Mark
    Speller, Camilla
    Hendy, Jessica
    Weston, Darlene A.
    MacDonald, Sandy J.
    Thomas, Gavin H.
    Collins, Matthew J.
    Lewis, Cecil M.
    Hofman, Corinne
    Warinner, Christina
    SCIENTIFIC REPORTS, 2016, 6
  • [40] Spatiotemporal dynamics of the microbial diversity on salt-preserved goatskins assessed by culturing and 16S rRNA gene amplicon sequencing (vol 4, 32, 2022)
    Li, X.
    COLLAGEN AND LEATHER, 2024, 5 (01)
12345