Reverse Genetics and High Throughput Sequencing Methodologies for Plant Functional Genomics

被引:29
作者
Ben-Amar, Anis [1 ,2 ]
Daldoul, Samia [1 ]
Reustle, Goetz M. [2 ]
Krczal, Gabriele [2 ]
Mliki, Ahmed [1 ]
机构
[1] Ctr Biotechnol Borj Cedria, Dept Plant Mol Physiol, Borj Cedria, Tunisia
[2] AgroScience GmbH, AlPlanta Inst Plant Res, Neustadt, Germany
关键词
Functional genomics; Omics platforms; Reverse genetics; Large-scale sequencing; AGROBACTERIUM-MEDIATED TRANSFORMATION; TOBACCO RATTLE VIRUS; HOMOLOGOUS RECOMBINATION; ARABIDOPSIS-THALIANA; RNA INTERFERENCE; TARGETED MUTAGENESIS; POPULUS-TRICHOCARPA; ANTIVIRAL DEFENSE; PATHWAY DATABASE; SYSTEMS BIOLOGY;
D O I
10.2174/1389202917666160520102827
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In the post-genomic era, increasingly sophisticated genetic tools are being developed with the long-term goal of understanding how the coordinated activity of genes gives rise to a complex organism. With the advent of the next generation sequencing associated with effective computational approaches, wide variety of plant species have been fully sequenced giving a wealth of data sequence information on structure and organization of plant genomes. Since thousands of gene sequences are already known, recently developed functional genomics approaches provide powerful tools to analyze plant gene functions through various gene manipulation technologies. Integration of different omics platforms along with gene annotation and computational analysis may elucidate a complete view in a system biology level. Extensive investigations on reverse genetics methodologies were deployed for assigning biological function to a specific gene or gene product. We provide here an updated overview of these high throughout strategies highlighting recent advances in the knowledge of functional genomics in plants.
引用
收藏
页码:460 / 475
页数:16
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