NMR assignments of HIV-2 TAR RNA

被引：3

作者：

Carlomagno, Teresa ^{[1
]}

Amata, Irene

Williamson, James R. ^{[3
,4
]}

Hennig, Mirko ^{[2
]}

机构：

[1] European Mol Biol Lab, Struct & Computat Biol Unit, D-69117 Heidelberg, Germany

[2] Med Univ S Carolina, Dept Biochem & Mol Biol, Charleston, SC 29425 USA

[3] Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA

[4] Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA

来源：

BIOMOLECULAR NMR ASSIGNMENTS | 2008年 / 2卷 / 02期

关键词：

HIV-2; TAR; RNA synthesis; RNA resonance assignment;

D O I：

10.1007/s12104-008-9112-x

中图分类号：

Q6 [生物物理学];

学科分类号：

071011 ;

摘要：

We report nearly complete assignment for all H-1, C-13, P-31, and N-15 resonances in the 30-nucleotide stem-loop HIV-2 TAR RNA located at the 5' end of all viral mRNAs.

引用

页码：167 / 169

页数：3

共 10 条

[1] Solution structure of the HIV-2 TAR-argininamide complex [J].

Brodsky, AS ;

Williamson, JR .

JOURNAL OF MOLECULAR BIOLOGY, 1997, 267 (03) :624-639

[2] A novel PH-CT-COSY methodology for measuring JPH coupling constants in unlabeled nucleic acids.: Application to HIV-2 TAR RNA [J].

Carlomagno, T ;

Hennig, M ;

Williamson, JR .

JOURNAL OF BIOMOLECULAR NMR, 2002, 22 (01) :65-81

[3] NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].

DELAGLIO, F ;

GRZESIEK, S ;

VUISTER, GW ;

ZHU, G ;

PFEIFER, J ;

BAX, A .

JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293

[4] 13C-Detection in RNA bases:: Revealing structure-chemical shift relationships [J].

Fares, Christophe ;

Amata, Irene ;

Carlomagno, Teresa .

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (51) :15814-15823

[5] Detection of N-H•••N hydrogen bonding in RNA via scalar couplings in the absence of observable imino proton resonances [J].

Hennig, M ;

Williamson, JR .

NUCLEIC ACIDS RESEARCH, 2000, 28 (07) :1585-1593

[6] Assignment and NOE analysis of 2′-hydroxyl protons in RNA:: Implications for stabilization of RNA A-form duplexes [J].

Hennig, M ;

Fohrer, J ;

Carlomagno, T .

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (07) :2028-2029

[7]

MILLIGAN JF, 1989, METHOD ENZYMOL, V180, P51

[8] Specific HIV-1 TAR RNA loop sequence and functional groups are required for human cyclin Tl-Tat-TAR ternary complex formation [J].

Richter, S ;

Cao, H ;

Rana, TM .

BIOCHEMISTRY, 2002, 41 (20) :6391-6397

[9] Role of viral regulatory and accessory proteins in HIV-1 replication [J].

Seelamgari, A ;

Maddukuri, A ;

Berro, R ;

de la Fuente, C ;

Kehn, K ;

Deng, LW ;

Dadgar, S ;

Bottazzi, ME ;

Ghedin, E ;

Pumfery, A ;

Kashanchi, F .

FRONTIERS IN BIOSCIENCE-LANDMARK, 2004, 9 :2388-2413

[10] A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA [J].

Wei, P ;

Garber, ME ;

Fang, SM ;

Fischer, WH ;

Jones, KA .

CELL, 1998, 92 (04) :451-462

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