Mutagenesis and phenotyping resources in zebrafish for studying development and human disease

被引:37
作者
Varshney, Gaurav Kumar [1 ]
Burgess, Shawn Michael [1 ]
机构
[1] NHGRI, Genome Technol Branch, Bethesda, MD 20892 USA
基金
美国国家卫生研究院;
关键词
zebrafish; mutagenesis; phenotyping; resources; knockouts; TARGETED GENE DISRUPTION; ZINC-FINGER NUCLEASES; INSERTIONAL MUTAGENESIS; GENOME-WIDE; EFFICIENT CONSTRUCTION; CHROMOSOMAL DELETIONS; POSITIONAL CLONING; POINT MUTATIONS; MODEL ORGANISM; TAL EFFECTORS;
D O I
10.1093/bfgp/elt042
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The zebrafish (Danio rerio) is an important model organism for studying development and human disease. The zebrafish has an excellent reference genome and the functions of hundreds of genes have been tested using both forward and reverse genetic approaches. Recent years have seen an increasing number of large-scale mutagenesis projects and the number of mutants or gene knockouts in zebrafish has increased rapidly, including for the first time conditional knockout technologies. In addition, targeted mutagenesis techniques such as zinc finger nucleases, transcription activator-like effector nucleases and clustered regularly interspaced short sequences (CRISPR) or CRISPR-associated (Cas), have all been shown to effectively target zebrafish genes as well as the first reported germline homologous recombination, further expanding the utility and power of zebrafish genetics. Given this explosion of mutagenesis resources, it is now possible to perform systematic, high-throughput phenotype analysis of all zebrafish gene knockouts.
引用
收藏
页码:82 / 94
页数:13
相关论文
共 118 条
[1]   A large-scale insertional mutagenesis screen in zebrafish [J].
Amsterdam, A ;
Burgess, S ;
Golling, G ;
Chen, WB ;
Sun, ZX ;
Townsend, K ;
Farrington, S ;
Haldi, M ;
Hopkins, N .
GENES & DEVELOPMENT, 1999, 13 (20) :2713-2724
[2]   Retroviral-mediated Insertional Mutagenesis in Zebrafish [J].
Amsterdam, Adam ;
Varshney, Gaurav Kumar ;
Burgess, Shawn Michael .
ZEBRAFISH: GENETICS, GENOMICS AND INFORMATICS, 3RD EDITION, 2011, 104 :59-82
[3]  
[Anonymous], 2011, AGR FOREST METEOROL, V151, P39, DOI [10.1016/j.agrformet.2010.09.001, DOI 10.1016/J.AGRF0RMET.2010.09.001]
[4]   Highly Efficient Targeted Mutagenesis of Drosophila with the CRISPR/Cas9 System [J].
Bassett, Andrew R. ;
Tibbit, Charlotte ;
Ponting, Chris P. ;
Liu, Ji-Long .
CELL REPORTS, 2013, 4 (01) :220-228
[5]   In vivo genome editing using a high-efficiency TALEN system [J].
Bedell, Victoria M. ;
Wang, Ying ;
Campbell, Jarryd M. ;
Poshusta, Tanya L. ;
Starker, Colby G. ;
Krug, Randall G., II ;
Tan, Wenfang ;
Penheiter, Sumedha G. ;
Ma, Alvin C. ;
Leung, Anskar Y. H. ;
Fahrenkrug, Scott C. ;
Carlson, Daniel F. ;
Voytas, Daniel F. ;
Clark, Karl J. ;
Essner, Jeffrey J. ;
Ekker, Stephen C. .
NATURE, 2012, 491 (7422) :114-U133
[6]   Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases [J].
Beumer, Kelly J. ;
Trautman, Jonathan K. ;
Bozas, Ana ;
Liu, Ji-Long ;
Rutter, Jared ;
Gall, Joseph G. ;
Carroll, Dana .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (50) :19821-19826
[7]  
Bibikova M, 2002, GENETICS, V161, P1169
[8]   Efficient Mapping and Cloning of Mutations in Zebrafish by Low-Coverage Whole-Genome Sequencing [J].
Bowen, Margot E. ;
Henke, Katrin ;
Siegfried, Kellee R. ;
Warman, Matthew L. ;
Harris, Matthew P. .
GENETICS, 2012, 190 (03) :1017-U229
[9]   Genetic Analysis of Zinc-Finger Nuclease-Induced Gene Targeting in Drosophila [J].
Bozas, Ana ;
Beumer, Kelly J. ;
Trautman, Jonathan K. ;
Carroll, Dana .
GENETICS, 2009, 182 (03) :641-651
[10]   Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers [J].
Briggs, Adrian W. ;
Rios, Xavier ;
Chari, Raj ;
Yang, Luhan ;
Zhang, Feng ;
Mali, Prashant ;
Church, George M. .
NUCLEIC ACIDS RESEARCH, 2012, 40 (15) :e117