Development and Mining of a Volatile Organic Compound Database

被引:23
作者
Abdullah, Azian Azamimi [1 ,2 ]
Altaf-Ul-Amin, Md. [1 ]
Ono, Naoaki [1 ]
Sato, Tetsuo [1 ]
Sugiura, Tadao [1 ]
Morita, Aki Hirai [1 ]
Katsuragi, Tetsuo [3 ]
Muto, Ai [4 ]
Nishioka, Takaaki [1 ]
Kanaya, Shigehiko [1 ]
机构
[1] Nara Inst Sci & Technol, Grad Sch Informat Sci, Nara 6300192, Japan
[2] Univ Malaysia Perlis, Sch Mechatron Engn, Arau 02600, Perlis, Malaysia
[3] Toyohashi Univ Technol, Dept Comp Sci & Engn, Toyohashi, Aichi 4418580, Japan
[4] Nara Inst Sci & Technol, Grad Sch Biol Sci, Nara 6300192, Japan
关键词
LUNG-CANCER; DISEASE; DIAGNOSIS; ALGORITHM; SCENT;
D O I
10.1155/2015/139254
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Volatile organic compounds (VOCs) are small molecules that exhibit high vapor pressure under ambient conditions and have low boiling points. Although VOCs contribute only a small proportion of the total metabolites produced by living organisms, they play an important role in chemical ecology specifically in the biological interactions between organisms and ecosystems. VOCs are also important in the health care field as they are presently used as a biomarker to detect various human diseases. Information on VOCs is scattered in the literature until now; however, there is still no available database describing VOCs and their biological activities. To attain this purpose, we have developed KNApSAcK Metabolite Ecology Database, which contains the information on the relationships between VOCs and their emitting organisms. The KNApSAcK Metabolite Ecology is also linked with the KNApSAcK Core and KNApSAcK Metabolite Activity Database to provide further information on the metabolites and their biological activities. The VOC database can be accessed online.
引用
收藏
页数:13
相关论文
共 35 条
  • [1] Acree T., Flavornet and human odor space
  • [2] KNApSAcK Family Databases: Integrated Metabolite-Plant Species Databases for Multifaceted Plant Research
    Afendi, Farit Mochamad
    Okada, Taketo
    Yamazaki, Mami
    Hirai-Morita, Aki
    Nakamura, Yukiko
    Nakamura, Kensuke
    Ikeda, Shun
    Takahashi, Hiroki
    Altaf-Ul-Amin, Md.
    Darusman, Latifah K.
    Saito, Kazuki
    Kanaya, Shigehiko
    [J]. PLANT AND CELL PHYSIOLOGY, 2012, 53 (02) : e1
  • [3] Altaf-Ul-Amin M, 2006, J COMPUT AIDED CHEM, V7, P150
  • [4] Development and implementation of an algorithm for detection of protein complexes in large interaction networks
    Altaf-Ul-Amin, Md
    Shinbo, Yoko
    Mihara, Kenji
    Kurokawa, Ken
    Kanaya, Shigehiko
    [J]. BMC BIOINFORMATICS, 2006, 7 (1)
  • [5] Exhaled volatile organic compounds identify patients with colorectal cancer
    Altomare, D. F.
    Di Lena, M.
    Porcelli, F.
    Trizio, L.
    Travaglio, E.
    Tutino, M.
    Dragonieri, S.
    Memeo, V.
    de Gennaro, G.
    [J]. BRITISH JOURNAL OF SURGERY, 2013, 100 (01) : 144 - 151
  • [6] ChemMine tools: an online service for analyzing and clustering small molecules
    Backman, Tyler W. H.
    Cao, Yiqun
    Girke, Thomas
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : W486 - W491
  • [7] Volatile Metabolites of Pathogens: A Systematic Review
    Bos, Lieuwe D. J.
    Sterk, Peter J.
    Schultz, Marcus J.
    [J]. PLOS PATHOGENS, 2013, 9 (05)
  • [8] ChemmineR: a compound mining framework for R
    Cao, Yiqun
    Charisi, Anna
    Cheng, Li-Chang
    Jiang, Tao
    Girke, Thomas
    [J]. BIOINFORMATICS, 2008, 24 (15) : 1733 - 1734
  • [9] Volatiles produced by soil-borne endophytic bacteria increase plant pathogen resistance and affect tritrophic interactions
    D'Alessandro, Marco
    Erb, Matthias
    Ton, Jurriaan
    Brandenburg, Anna
    Karlen, Danielle
    Zopfi, Jakob
    Turlings, Ted C. J.
    [J]. PLANT CELL AND ENVIRONMENT, 2014, 37 (04) : 813 - 826
  • [10] SuperScent-a database of flavors and scents
    Dunkel, Mathias
    Schmidt, Ulrike
    Struck, Swantje
    Berger, Lena
    Gruening, Bjoern
    Hossbach, Julia
    Jaeger, Ines S.
    Effmert, Uta
    Piechulla, Birgit
    Eriksson, Roger
    Knudsen, Jette
    Preissner, Robert
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : D291 - D294