Why is the reduction of NO in cytochrome c dependent nitric oxide reductase (cNOR) not electrogenic?

被引:24
作者
Blomberg, Margareta R. A. [1 ]
Siegbahn, Per E. M. [1 ]
机构
[1] Stockholm Univ, Dept Organ Chem, Arrhenius Lab, SE-10691 Stockholm, Sweden
来源
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS | 2013年 / 1827卷 / 07期
关键词
Nitric oxide reductase; Cytochrome c oxidase; Density functional theory; Electrogenicity; Proton pumping; HEME-COPPER OXIDASE; QUANTUM-CHEMISTRY; N2O GENERATION; PROTON; FUNCTIONALS; MECHANISM; PATHWAYS; METAL;
D O I
10.1016/j.bbabio.2013.04.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The membrane-bound enzyme cNOR (cytochrome c dependent nitric oxide reductase) catalyzes the reduction of NO in a non-electrogenic process. This is in contrast to the reduction of O-2 in cytochrome c oxidase (CcO), the other member of the heme-copper oxidase family, which stores energy by the generation of a membrane gradient. This difference between the two enzymes has not been understood, but it has been speculated to be of kinetic origin, since per electron the NO reduction is more exergonic than the O-2 reduction, and the energy should thus be enough for an electrogenic process. However, it has not been clear how and why electrogenicity, which mainly affects the thermodynamics, would slow down the very exergonic NO reduction. Quantum chemical calculations are used to construct a free energy profile for the catalytic reduction of NO in the active site of cNOR. The energy profile shows that the reduction of the NO molecules by the enzyme and the formation of N2O are very exergonic steps, making the rereduction of the enzyme endergonic and rate-limiting for the entire catalytic cycle. Therefore the NO reduction cannot be electrogenic, i.e. cannot take electrons and protons from the opposite sides of the membrane, since it would increase the endergonicity of the rereduction when the gradient is present, thereby increasing the rate-limiting barrier, and the reaction would become too slow. It also means that proton pumping coupled to electron transfer is not possible in cNOR In CcO the corresponding rereduction of the enzyme is very exergonic. (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:826 / 833
页数:8
相关论文
共 31 条
[11]   Exploring the terminal region of the proton pathway in the bacterial nitric oxide reductase [J].
Flock, Ulrika ;
Lachmann, Peter ;
Reimann, Joachim ;
Watmough, Nicholas J. ;
Adelroth, Pia .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2009, 103 (05) :845-850
[12]   The cytochrome cbb3 from Pseudomonas stutzeri displays nitric oxide reductase activity [J].
Forte, E ;
Urbani, A ;
Saraste, M ;
Sarti, P ;
Brunori, M ;
Giuffrè, A .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 2001, 268 (24) :6486-6490
[13]   A low-redox potential heme in the dinuclear center of bacterial nitric oxide reductase:: Implications for the evolution of energy-conserving heme-copper oxidases [J].
Grönberg, KLC ;
Roldán, MD ;
Prior, L ;
Butland, G ;
Cheesman, MR ;
Richardson, DJ ;
Spiro, S ;
Thomson, AJ ;
Watmough, NJ .
BIOCHEMISTRY, 1999, 38 (42) :13780-13786
[14]   Proton and electron pathways in the bacterial nitric oxide reductase [J].
Hendriks, JHM ;
Jasaitis, A ;
Saraste, M ;
Verkhovsky, MI .
BIOCHEMISTRY, 2002, 41 (07) :2331-2340
[15]   Structural Basis of Biological N2O Generation by Bacterial Nitric Oxide Reductase [J].
Hino, Tomoya ;
Matsumoto, Yushi ;
Nagano, Shingo ;
Sugimoto, Hiroshi ;
Fukumori, Yoshihiro ;
Murata, Takeshi ;
Iwata, So ;
Shiro, Yoshitsugu .
SCIENCE, 2010, 330 (6011) :1666-1670
[16]   Vectorial proton transfer coupled to reduction of O2 and NO by a heme-copper oxidase [J].
Huang, Yafei ;
Reimann, Joachim ;
Lepp, Hakan ;
Drici, Nadjia ;
Adelroth, Pia .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (51) :20257-20262
[17]  
Jaguar 7.6, 2009, JAG 7 6
[18]   Intrinsic and extrinsic uncoupling of oxidative phosphorylation [J].
Kadenbach, B .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2003, 1604 (02) :77-94
[19]   Proton-Coupled Electron Transfer in Cytochrome Oxidase [J].
Kaila, Ville R. I. ;
Verkhovsky, Michael I. ;
Wikstrom, Marten .
CHEMICAL REVIEWS, 2010, 110 (12) :7062-7081
[20]   Formation of the "peroxy" intermediate in cytochrome c oxidase is associated with internal proton/hydrogen transfer [J].
Karpefors, M ;
Ädelroth, P ;
Namslauer, A ;
Zhen, YJ ;
Brzezinski, P .
BIOCHEMISTRY, 2000, 39 (47) :14664-14669