Genome-wide identification and comparative expression analysis of NBS-LRR-encoding genes upon Colletotrichum gloeosporioides infection in two ecotypes of Fragaria vesca

被引：0
作者：
Li, Jing [1 ,2 ]
Zhang, Qing-Yu [1 ,3 ]
Gao, Zhi-Hong [2 ]
Wang, Fei [3 ]
Duan, Ke [1 ]
Ye, Zheng-Wen [1 ]
Gao, Qing-Hua [1 ]
机构：
[1] SAAS, Forestry & Fruit Tree Res Inst, Shanghai Key Lab Protected Hort Technol, Shanghai 201403, Peoples R China
[2] Nanjing Agr Univ, Coll Hort Sci, Nanjing 210095, Peoples R China
[3] Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China
来源：
GENE | 2013年 / 527卷 / 01期
关键词：
Fragaria vesca; Resistance gene; qPCR; Colletotrichum gloeosporioides; Genetic variation; ANTHRACNOSE RESISTANCE; DEFENSE RESPONSE; STRAWBERRY GENES; PLANT; PROTEINS; CLONING; ARABIDOPSIS; DIVERSITY; EVOLUTION; GENOTYPES;
D O I：
10.1016/j.gene.2013.06.008
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Anthracnose caused by Colletotrichum spp. is one of the most destructive diseases of cultivated strawberry (Fragaria x ananassa Duchesne) worldwide. The correlation between NBS-LRR genes, the largest class of known resistance genes, and strawberry anthracnose resistance has been elusive. BLAST search in NCBI identified 94 FvNBSs in the diploid genome of strawberry Fragaria vesca, with 67 of the TIR-NBS-LRR type. At least 36 FvNBSs were expressed, with 25% being non-coding genes. Two F. vesca ecotypes, HLJ and YW, showed great variations in both morphological and physiological responses upon C gloeosporioides infection. qRT-PCR revealed that 5 of the 12 leaf-expressed FvNBSs displaying opposite transcription responses to C. gloeosporioides infection in two ecotypes. These results showed that the transcriptional responses of several FvNBSs were involved in the ecotype-specific responses to C gloeosporioides in F. vesca. These FvNBSs hold potential in characterizing molecular components and developing novel markers associated with anthracnose resistance in strawberry. (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码：215 / 227
页数：13
相关论文
共 41 条
  • [31] Genome-Wide Identification and Expression Pattern Analysis of the WNK Gene Family in Apple under Abiotic Stress and Colletotrichum siamense Infection
    Wei, Ziwen
    Wu, Zheng-Chao
    Zang, Jian
    Zhao, Di
    Guo, Wei
    Dai, Hongyan
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (15)
  • [32] Genome-wide identification and expression analysis of two-component system genes in sweet potato (Ipomoea batatas L.)
    Huo, Ruxue
    Zhao, Yanshu
    Liu, Tianxu
    Xu, Meng
    Wang, Xiaohua
    Xu, Ping
    Dai, Shengjie
    Cui, Xiaoyu
    Han, Yonghua
    Liu, Zhenning
    Li, Zongyun
    FRONTIERS IN PLANT SCIENCE, 2023, 13
  • [33] Genome-Wide Identification and Expression Analysis of ACTIN Family Genes in the Sweet Potato and Its Two Diploid Relatives
    Xia, Shuanghong
    Zhang, Huan
    He, Shaozhen
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (13)
  • [34] Genome-Wide Identification of the Glycine-Rich RNA-Binding Protein Genes and Their Expression Analysis upon Aspergillus flavus Infection in Groundnut (Arachis hypogaea)
    Jose, Alin M.
    Tejaswi, Avuthu
    Kokiladevi, Eswaran
    Sharma, Niharika
    Yogendra, Kalenahalli
    AGRONOMY-BASEL, 2024, 14 (01):
  • [35] Genome-wide identification and expression analysis of late embryogenesis abundant protein-encoding genes in rye (Secale cereale L.)
    Ding, Mengyue
    Wang, Lijian
    Zhan, Weimin
    Sun, Guanghua
    Jia, Xiaolin
    Chen, Shizhan
    Ding, Wusi
    Yang, Jianping
    PLOS ONE, 2021, 16 (04):
  • [36] Genome-wide identification, classification and expression analysis of genes encoding putative fasciclin-like arabinogalactan proteins in Chinese cabbage (Brassica rapa L.)
    Li Jun
    Wu Xiaoming
    MOLECULAR BIOLOGY REPORTS, 2012, 39 (12) : 10541 - 10555
  • [37] Genome-wide identification and comparative expression analysis reveal a rapid expansion and functional divergence of duplicated genes in the WRKY gene family of cabbage, Brassica oleracea var. capitata
    Yao, Qiu-Yang
    Xia, En-Hua
    Liu, Fei-Hu
    Gao, Li-Zhi
    GENE, 2015, 557 (01) : 35 - 42
  • [38] Genome-wide identification, expression analysis of GH3 family genes in Medicago truncatula under stress-related hormones and Sinorhizobium meliloti infection
    Yang, Yanjun
    Yue, Runqing
    Sun, Tao
    Zhang, Lei
    Chen, Wei
    Zeng, Houqing
    Wang, Huizhong
    Shen, Chenjia
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2015, 99 (02) : 841 - 854
  • [39] Genome-wide identification of Brassinosteroid insensitive 1-associated receptor kinase 1 genes and expression analysis in response to pathogen infection in cucumber (Cucumis sativus L.)
    Han, Jianan
    Dong, Shaoyun
    Guan, Jiantao
    Liu, Xiaoping
    Gu, Xingfang
    Miao, Han
    Zhang, Shengping
    BMC PLANT BIOLOGY, 2024, 24 (01):
  • [40] Genome-Wide Identification, Evolution, and Comparative Analysis of B-Box Genes in Brassica rapa, B. oleracea, and B. napus and Their Expression Profiling in B. rapa in Response to Multiple Hormones and Abiotic Stresses
    Singh, Sonam
    Chhapekar, Sushil Satish
    Ma, Yinbo
    Rameneni, Jana Jeevan
    Oh, Sang Heon
    Kim, Jusang
    Lim, Yong Pyo
    Choi, Su Ryun
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (19)
12345