Genome-wide identification and comparative expression analysis of NBS-LRR-encoding genes upon Colletotrichum gloeosporioides infection in two ecotypes of Fragaria vesca

被引：0
|
作者：
Li, Jing [1 ,2 ]
Zhang, Qing-Yu [1 ,3 ]
Gao, Zhi-Hong [2 ]
Wang, Fei [3 ]
Duan, Ke [1 ]
Ye, Zheng-Wen [1 ]
Gao, Qing-Hua [1 ]
机构：
[1] SAAS, Forestry & Fruit Tree Res Inst, Shanghai Key Lab Protected Hort Technol, Shanghai 201403, Peoples R China
[2] Nanjing Agr Univ, Coll Hort Sci, Nanjing 210095, Peoples R China
[3] Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China
来源：
GENE | 2013年 / 527卷 / 01期
关键词：
Fragaria vesca; Resistance gene; qPCR; Colletotrichum gloeosporioides; Genetic variation; ANTHRACNOSE RESISTANCE; DEFENSE RESPONSE; STRAWBERRY GENES; PLANT; PROTEINS; CLONING; ARABIDOPSIS; DIVERSITY; EVOLUTION; GENOTYPES;
D O I：
10.1016/j.gene.2013.06.008
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Anthracnose caused by Colletotrichum spp. is one of the most destructive diseases of cultivated strawberry (Fragaria x ananassa Duchesne) worldwide. The correlation between NBS-LRR genes, the largest class of known resistance genes, and strawberry anthracnose resistance has been elusive. BLAST search in NCBI identified 94 FvNBSs in the diploid genome of strawberry Fragaria vesca, with 67 of the TIR-NBS-LRR type. At least 36 FvNBSs were expressed, with 25% being non-coding genes. Two F. vesca ecotypes, HLJ and YW, showed great variations in both morphological and physiological responses upon C gloeosporioides infection. qRT-PCR revealed that 5 of the 12 leaf-expressed FvNBSs displaying opposite transcription responses to C. gloeosporioides infection in two ecotypes. These results showed that the transcriptional responses of several FvNBSs were involved in the ecotype-specific responses to C gloeosporioides in F. vesca. These FvNBSs hold potential in characterizing molecular components and developing novel markers associated with anthracnose resistance in strawberry. (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码：215 / 227
页数：13
相关论文
共 41 条
  • [21] Genome-Wide Identification, Characterization, and Expression Analysis of Tubby-like Protein (TLP) Gene Family Members in Woodland Strawberry (Fragaria vesca)
    Li, Shuangtao
    Wang, Guixia
    Chang, Linlin
    Sun, Rui
    Wu, Ruishuang
    Zhong, Chuanfei
    Gao, Yongshun
    Zhang, Hongli
    Wei, Lingzhi
    Wei, Yongqing
    Zhang, Yuntao
    Dong, Jing
    Sun, Jian
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (19)
  • [22] Genome-wide analysis of LysM gene family members and their expression in response to Colletotrichum fructicola infection in Octoploid strawberry(Fragaria x ananassa)
    Zhang, Liqing
    Li, Shuigen
    Fang, Xianping
    An, Haishan
    Zhang, Xueying
    FRONTIERS IN PLANT SCIENCE, 2023, 13
  • [23] Genome-wide identification and comparative expression analysis of LEA genes in watermelon and melon genomes
    Altunoglu, Yasemin Celik
    Baloglu, Mehmet Cengiz
    Baloglu, Pinar
    Yer, Esra Nurten
    Kara, Sibel
    PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, 2017, 23 (01) : 5 - 21
  • [24] Genome-wide identification of the calcium-dependent protein kinase gene family in Fragaria vesca and expression analysis under different biotic stresses
    Xiong, Yifan
    Lin, Dahe
    Ma, Shiwei
    Wang, Chunhua
    Lin, Shoukai
    EUROPEAN JOURNAL OF PLANT PATHOLOGY, 2022, 164 (02) : 283 - 298
  • [25] Genome-Wide Identification and Expression Analysis of Two-Component System Genes in Tomato
    He, Yanjun
    Liu, Xue
    Ye, Lei
    Pan, Changtian
    Chen, Lifei
    Zou, Tao
    Lu, Gang
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2016, 17 (08)
  • [26] YUCCA type auxin biosynthesis genes encoding flavin monooxygenases in melon: Genome-wide identification and developmental expression analysis
    Zheng, L.
    Zhang, L.
    Duan, K.
    Zhu, Z. -P.
    Ye, Z. -W.
    Gao, Q. -H.
    SOUTH AFRICAN JOURNAL OF BOTANY, 2016, 102 : 142 - 152
  • [27] Genome-Wide Identification and Comparative Analysis of WOX Genes in Four Euphorbiaceae Species and Their Expression Patterns in Jatropha curcas
    Wang, Zhanjun
    Cai, Qianwen
    Xia, Haimeng
    Han, Bingqing
    Li, Minhui
    Wang, Yue
    Zhu, Minhui
    Jiao, Chunyan
    Wang, Dandan
    Zhu, Junjie
    Yuan, Wenya
    Zhu, Di
    Xu, Congcong
    Wang, Hongyan
    Zhou, Minghui
    Zhang, Xie
    Shi, Jisen
    Chen, Jinhui
    FRONTIERS IN GENETICS, 2022, 13
  • [28] Genome-Wide Identification and Expression Analysis of Chitinase Genes in Watermelon under Abiotic Stimuli and Fusarium oxysporum Infection
    Xuan, Changqing
    Feng, Mengjiao
    Li, Xin
    Hou, Yinjie
    Wei, Chunhua
    Zhang, Xian
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (01)
  • [29] Genome-wide identification and analysis of wheat LRR-RLK family genes following Chinese wheat mosaic virus infection
    Liu, Shuang
    Lei, Jiajia
    Zhang, Juan
    Liu, Hanhong
    Ye, Zhuangxin
    Yang, Jin
    Lu, Qiseng
    Liu, Peng
    Chen, Jianping
    Yang, Jian
    FRONTIERS IN PLANT SCIENCE, 2023, 13
  • [30] Genome-wide identification and expression analysis of two-component system genes in switchgrass (Panicum virgatum L.)
    Wu, Baolin
    Sun, Mengyu
    Zhong, Tao
    Zhang, Jiawei
    Lei, Tingshu
    Yan, Yuming
    Chen, Xiaohong
    Nan, Rui
    Sun, Fengli
    Zhang, Chao
    Xi, Yajun
    BMC PLANT BIOLOGY, 2024, 24 (01):
12345