Genome interrupted: sequencing of prostate cancer reveals the importance of chromosomal rearrangements

被引:9
|
作者
Kumar, Akash [1 ]
Shendure, Jay [1 ]
Nelson, Peter S. [2 ]
机构
[1] Univ Washington, Dept Genome Sci, Seattle, WA 98105 USA
[2] Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA
来源
GENOME MEDICINE | 2011年 / 3卷
关键词
Prostate Cancer; Prostate Cancer Cell Line; Open Chromatin; Primary Prostate Cancer; Prostate Cancer Research;
D O I
10.1186/gm237
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A recent study involving whole genome sequencing of seven prostate cancers has provided the first comprehensive assessment of genomic changes that underlie this common malignancy. Point mutations were found to be infrequent but changes in chromosome structure were common. Rearrangements were linked to chromatin organization and associated with regions involved in transcription factor binding. Novel candidate prostate cancer genes were also identified, highlighting the importance of genome sequencing to identify oncogenic changes that are otherwise invisible to detection.
引用
收藏
页数:4
相关论文
共 50 条
  • [1] Genome interrupted: sequencing of prostate cancer reveals the importance of chromosomal rearrangements
    Akash Kumar
    Jay Shendure
    Peter S Nelson
    Genome Medicine, 3
  • [2] Linked read whole genome sequencing reveals pervasive chromosomal level instability and novel rearrangements in brain metastases from colorectal cancer
    Xia, Li C.
    Bell, John M.
    Wood-Bouwens, Christina
    King, Daniel A.
    Shin, GiWon
    Greer, Stephanie
    Connolly, Ian D.
    Gephart, Melanie H.
    Ji, Hanlee P.
    CANCER RESEARCH, 2018, 78 (13)
  • [3] Characterization of complex chromosomal aberrations in prostate cancer from whole genome sequencing
    Berger, Michael F.
    Lawrence, Michael S.
    Demichelis, Francesca
    Drier, Yotam
    Cibulskis, Kristian
    Sivachenko, Andrey Y.
    Sboner, Andrea
    Esgueva, Raquel
    Pflueger, Dorothee
    Sougnez, Carrie
    Onofrio, Robert
    Carter, Scott L.
    Park, Kyung
    Habegger, Lukas
    Ambrogio, Lauren
    Fennell, Timothy
    Parking, Melissa
    Saksena, Gordon
    Voet, Douglas
    Ramose, Alex H.
    Pugh, Trevor J.
    Wilkinson, Jane
    Fisher, Sheila
    Winckler, Wendy
    Mahan, Scott
    Ardlie, Kristin
    Baldwin, Jennifer
    Simons, Jonathan W.
    Kitabayashi, Naoki
    MacDonald, Theresa Y.
    Kantoff, Philip W.
    Chin, Lynda
    Gabriel, Stacey B.
    Gerstein, Mark B.
    Golub, Todd R.
    Meyerson, Matthew
    Tewari, Ashutosh
    Lander, Eric S.
    Getz, Gad
    Rubin, Mark A.
    Garraway, Levi A.
    CANCER RESEARCH, 2011, 71
  • [4] Blindspots in short-read genome sequencing for classic chromosomal rearrangements
    Gauthier, Lucas
    Caillot, Claire
    Pujalte, Mathilde
    Till, Marianne
    Sanlaville, Damien
    Chatron, Nicolas
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 1572 - 1572
  • [5] Whole Genome Sequencing of Indolent CLL Reveals Novel Structural Rearrangements
    Kasar, Siddha
    Tiao, Grace
    Improgo, Reina
    Kiezun, Adam
    Sougnez, Carrie
    Bahl, Samira
    Fernandes, Stacey M.
    Vartanov, Alexander R.
    Hoang, Kevin
    Gabriel, Stacey
    Landau, Dan A.
    Wu, Catherine J.
    Lander, Eric
    Kim, Haesook T.
    Getz, Gad
    Brown, Jennifer R.
    BLOOD, 2014, 124 (21)
  • [6] Translocation-Capture Sequencing Reveals the Extent and Nature of Chromosomal Rearrangements in B Lymphocytes
    Klein, Isaac A.
    Resch, Wolfgang
    Jankovic, Mila
    Oliveira, Thiago
    Yamane, Arito
    Nakahashi, Hirotaka
    Di Virgilio, Michela
    Bothmer, Anne
    Nussenzweig, Andre
    Robbiani, Davide F.
    Casellas, Rafael
    Nussenzweig, Michel C.
    CELL, 2011, 147 (01) : 95 - 106
  • [7] Whole Genome Sequencing of 9 patients allowed a better understanding of complex chromosomal rearrangements
    Chatron, N.
    Diguet, F.
    Rollat-Farnier, P.
    Uguen, K.
    Zillhardt, J. Lauer
    Sorlin, A.
    Andrieux, J.
    Chantot-Bastaraud, S.
    Callier, P.
    Cordier, M.
    Dubourg, C.
    Girard, F.
    Jaillard, S.
    Keren, B.
    Lespinasse, J.
    Marle, N.
    Masurel, A.
    Mathieu, M.
    Metay, C.
    Portnoi, M.
    Prieur, F.
    Rio, M.
    Siffroi, J.
    Schluth-Bolard, C.
    Sanlaville, D.
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2019, 27 : 479 - 480
  • [8] CHROMOSOMAL REARRANGEMENTS AND CANCER
    WAINSCOAT, JS
    SAUDI MEDICAL JOURNAL, 1987, 8 (04) : 353 - 357
  • [9] Chromosomal rearrangements, genome reorganization, and speciation
    I. Yu. Bakloushinskaya
    Biology Bulletin, 2016, 43 : 759 - 775
  • [10] Chromosomal rearrangements, genome reorganization, and speciation
    Bakloushinskaya, I. Yu.
    BIOLOGY BULLETIN, 2016, 43 (08) : 759 - 775