Identification of QTLs Associated with Oil Content in a High-Oil Brassica napus Cultivar and Construction of a High-Density Consensus Map for QTLs Comparison in B. napus

被引:73
作者
Wang, Xiaodong [1 ]
Wang, Hao [3 ]
Long, Yan [2 ]
Li, Dianrong [3 ]
Yin, Yongtai [1 ]
Tian, Jianhua [3 ]
Chen, Li [1 ]
Liu, Liezhao [4 ]
Zhao, Weiguo [3 ]
Zhao, Yajun [3 ]
Yu, Longjiang [1 ]
Li, Maoteng [1 ]
机构
[1] Huazhong Univ Sci & Technol, Coll Life Sci & Technol, Inst Resource Biol & Biotechnol, Wuhan 430074, Peoples R China
[2] Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Wuhan, Peoples R China
[3] Natl Ctr Oil Crops Genet Improvement, Shaanxi Rapeseed Branch, Hybrid Rapeseed Res Ctr Shaanxi Prov, Dali, Peoples R China
[4] Southwest Univ, Coll Agron & Biotechnol, Chongqing, Peoples R China
基金
中国国家自然科学基金;
关键词
QUANTITATIVE TRAIT LOCI; GENETIC-MAP; OILSEED RAPE; AGRONOMIC TRAITS; LINKAGE MAP; SEED OIL; MICROSATELLITE MARKERS; PROTEIN CONCENTRATIONS; FLOWERING TIME; L;
D O I
10.1371/journal.pone.0080569
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Increasing seed oil content is one of the most important goals in breeding of rapeseed (B. napus L.). To dissect the genetic basis of oil content in B. napus, a large and new double haploid (DH) population containing 348 lines was obtained from a cross between 'KenC-8' and 'N53-2', two varieties with >10% difference in seed oil content, and this population was named the KN DH population. A genetic linkage map consisting of 403 markers was constructed, which covered a total length of 1783.9 cM with an average marker interval of 4.4 cM. The KN DH population was phenotyped in eight natural environments and subjected to quantitative trait loci (QTL) analysis for oil content. A total of 63 identified QTLs explaining 2.64-17.88% of the phenotypic variation were identified, and these QTLs were further integrated into 24 consensus QTLs located on 11 chromosomes using meta-analysis. A high-density consensus map with 1335 marker loci was constructed by combining the KN DH map with seven other published maps based on the common markers. Of the 24 consensus QTLs in the KN DH population, 14 were new QTLs including five new QTLs in A genome and nine in C genome. The analysis revealed that a larger population with significant differences in oil content gave a higher power detecting new QTLs for oil content, and the construction of the consensus map provided a new clue for comparing the QTLs detected in different populations. These findings enriched our knowledge of QTLs for oil content and should be a potential in marker-assisted breeding of B. napus.
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页数:14
相关论文
共 73 条
[1]   BioMercator: integrating genetic maps and QTL towards discovery of candidate genes [J].
Arcade, A ;
Labourdette, A ;
Falque, M ;
Mangin, B ;
Chardon, F ;
Charcosset, A ;
Joets, J .
BIOINFORMATICS, 2004, 20 (14) :2324-2326
[2]  
Bradshaw HD, 1998, GENETICS, V149, P367
[3]   QTL analysis of an intervarietal set of substitution lines in Brassica napus:: (i) Seed oil content and fatty acid composition [J].
Burns, MJ ;
Barnes, SR ;
Bowman, JG ;
Clarke, MHE ;
Werner, CP ;
Kearsey, MJ .
HEREDITY, 2003, 90 (01) :39-48
[4]   GENETICS - DRIVING GENES AND CHROMOSOMES [J].
CHARLESWORTH, B .
NATURE, 1988, 332 (6163) :394-395
[5]   Identification of QTL for oil content, seed yield, and flowering time in oilseed rape (Brassica napus) [J].
Chen, Gang ;
Geng, Jianfeng ;
Rahman, Mukhlesur ;
Liu, Xueping ;
Tu, Jingxing ;
Fu, Tingdong ;
Li, Gengyi ;
McVetty, Peter B. E. ;
Tahir, M. .
EUPHYTICA, 2010, 175 (02) :161-174
[6]   Characterization of the quantitative trait locus OilA1 for oil content in Brassica napus [J].
Chen, Yubo ;
Qi, Lu ;
Zhang, Xiaoyu ;
Huang, Jixiang ;
Wang, Jibian ;
Chen, Hongcheng ;
Ni, Xiyuan ;
Xu, Fei ;
Dong, Yanjun ;
Xu, Haiming ;
Zhao, Jianyi .
THEORETICAL AND APPLIED GENETICS, 2013, 126 (10) :2499-2509
[7]   Development and genetic mapping of microsatellite markers from genome survey sequences in Brassica napus [J].
Cheng, Xiaomao ;
Xu, Jinsong ;
Xia, Shu ;
Gu, Jianxun ;
Yang, Yuan ;
Fu, Jie ;
Qian, Xiaoju ;
Zhang, Shunchang ;
Wu, Jiangsheng ;
Liu, Kede .
THEORETICAL AND APPLIED GENETICS, 2009, 118 (06) :1121-1131
[8]  
Cheung WY, 1997, INT S BRASS 97 10 CR, V459, P139
[9]   Genetic control of oil content in oilseed rape (Brassica napus L.) [J].
Delourme, R. ;
Falentin, C. ;
Huteau, V. ;
Clouet, V. ;
Horvais, R. ;
Gandon, B. ;
Specel, S. ;
Hanneton, L. ;
Dheu, J. E. ;
Deschamps, M. ;
Margale, E. ;
Vincourt, P. ;
Renard, M. .
THEORETICAL AND APPLIED GENETICS, 2006, 113 (07) :1331-1345
[10]   High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L [J].
Delourme, Regine ;
Falentin, Cyril ;
Fomeju, Berline Fopa ;
Boillot, Marie ;
Lassalle, Gilles ;
Andre, Isabelle ;
Duarte, Jorge ;
Gauthier, Valerie ;
Lucante, Nicole ;
Marty, Amandine ;
Pauchon, Maryline ;
Pichon, Jean-Philippe ;
Ribiere, Nicolas ;
Trotoux, Gwenn ;
Blanchard, Philippe ;
Riviere, Nathalie ;
Martinant, Jean-Pierre ;
Pauquet, Jerome .
BMC GENOMICS, 2013, 14