Data sharing in neuroimaging research

被引:179
作者
Poline, Jean-Baptiste [1 ,2 ]
Breeze, Janis L. [3 ]
Ghosh, Satrajit [4 ]
Gorgolewski, Krzysztof [5 ]
Halchenko, Yaroslav O. [6 ]
Hanke, Michael [7 ]
Haselgrove, Christian [8 ]
Helmer, Karl G. [9 ,10 ]
Keator, David B. [11 ,12 ]
Marcus, Daniel S. [13 ]
Poldrack, Russell A. [14 ,15 ,16 ]
Schwartz, Yannick [1 ]
Ashburner, John [17 ]
Kennedy, David N. [8 ]
机构
[1] Commissariat Energie Atom & Energies, Neurospin, Gif Sur Yvette, France
[2] Univ Calif Berkeley, Brain Imaging Ctr, Berkeley, CA 94720 USA
[3] Karolinska Inst, Int Neuroinformat Coordinating Facil, Stockholm, Sweden
[4] MIT, McGovern Inst Brain Res, Cambridge, MA 02139 USA
[5] Univ Edinburgh, Sch Informat, Edinburgh, Midlothian, Scotland
[6] Dartmouth Coll, Dept Psychol & Brain Sci, Hanover, NH 03755 USA
[7] Univ Magdeburg, Dept Expt Psychol, D-39106 Magdeburg, Germany
[8] Univ Massachusetts, Sch Med, Dept Psychiat, Div Informat, Worcester, MA 01655 USA
[9] Harvard Univ, Massachusetts Gen Hosp, Sch Med, Boston, MA USA
[10] Harvard Univ, Sch Med, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Boston, MA 02115 USA
[11] Univ Calif Irvine, Dept Psychiat & Human Behav, Irvine, CA 92717 USA
[12] Univ Calif Irvine, Dept Comp Sci, Irvine, CA 92717 USA
[13] Washington Univ, Sch Med, Dept Radiol, St Louis, MO 63110 USA
[14] Univ Texas Austin, Imaging Res Ctr, Austin, TX 78712 USA
[15] Univ Texas Austin, Dept Psychol, Austin, TX 78712 USA
[16] Univ Texas Austin, Dept Neurobiol, Austin, TX 78712 USA
[17] Wellcome Trust Ctr Neuroimaging, London, England
基金
美国国家科学基金会;
关键词
brain imaging; data sharing; standards; magnetic resonance imaging; fMRI; EEG-MEG; WORKING-MEMORY; HUMAN BRAIN; METAANALYSIS; SCHIZOPHRENIA; INSIGHTS; SCIENCE; FBIRN; MRI;
D O I
10.3389/fninf.2012.00009
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Significant resources around the world have been invested in neuroimaging studies of brain function and disease. Easier access to this large body of work should have profound impact on research in cognitive neuroscience and psychiatry, leading to advances in the diagnosis and treatment of psychiatric and neurological disease. A trend toward increased sharing of neuroimaging data has emerged in recent years. Nevertheless, a number of barriers continue to impede momentum. Many researchers and institutions remain uncertain about how to share data or lack the tools and expertise to participate in data sharing. The use of electronic data capture (EDC) methods for neuroimaging greatly simplifies the task of data collection and has the potential to help standardize many aspects of data sharing. We review here the motivations for sharing neuroimaging data, the current data sharing landscape, and the sociological or technical barriers that still need to be addressed. The INCF Task Force on Neuroimaging Datasharing, in conjunction with several collaborative groups around the world, has started work on several tools to ease and eventually automate the practice of data sharing. It is hoped that such tools will allow researchers to easily share raw, processed, and derived neuroirnaging data, with appropriate metadata and provenance records, and will improve the reproducibility of neuroimaging studies. By providing seamless integration of data sharing and analysis tools within a commodity research environment, the Task Force seeks to identify and minimize barriers to data sharing in the field of neuroimaging
引用
收藏
页数:13
相关论文
共 66 条
[1]   Issues in biomedical research data management and analysis: Needs and barriers [J].
Anderson, Nicholas R. ;
Lee, Sally ;
Brockenbrough, J. Scott ;
Minie, Mark E. ;
Fuller, Sherrilynne ;
Brinkley, James ;
Tarczy-Hornoch, Peter .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2007, 14 (04) :478-488
[2]  
[Anonymous], 2011, EXTRACTING VALUE CHA
[3]  
[Anonymous], 2007, Data Science Journal, DOI [DOI 10.2481/DSJ.6.OD36, 10.2481/dsj.6.OD36, DOI 10.2481/DSJ.6.0D36]
[4]  
Ashish Naveen, 2010, Front Neuroinform, V4, P118, DOI 10.3389/fninf.2010.00118
[5]   Achievement index climbs the ranks [J].
Ball, Philip .
NATURE, 2007, 448 (7155) :737-737
[6]   The pipeline system for Octave and Mat lab (PSOM): a lightweight scripting framework and execution engine for scientific workflows [J].
Bellec, Pierre ;
Lavoie-Courchesne, Sebastien ;
Dickinson, Phil ;
Lerch, Jason P. ;
Zijdenbos, Alex P. ;
Evans, Alan C. .
FRONTIERS IN NEUROINFORMATICS, 2012, 6
[7]  
BIRNEY E, 2009, NATURE, V461, P168, DOI DOI 10.1038/461168A
[8]   Toward discovery science of human brain function [J].
Biswal, Bharat B. ;
Mennes, Maarten ;
Zuo, Xi-Nian ;
Gohel, Suril ;
Kelly, Clare ;
Smith, Steve M. ;
Beckmann, Christian F. ;
Adelstein, Jonathan S. ;
Buckner, Randy L. ;
Colcombe, Stan ;
Dogonowski, Anne-Marie ;
Ernst, Monique ;
Fair, Damien ;
Hampson, Michelle ;
Hoptman, Matthew J. ;
Hyde, James S. ;
Kiviniemi, Vesa J. ;
Kotter, Rolf ;
Li, Shi-Jiang ;
Lin, Ching-Po ;
Lowe, Mark J. ;
Mackay, Clare ;
Madden, David J. ;
Madsen, Kristoffer H. ;
Margulies, Daniel S. ;
Mayberg, Helen S. ;
McMahon, Katie ;
Monk, Christopher S. ;
Mostofsky, Stewart H. ;
Nagel, Bonnie J. ;
Pekar, James J. ;
Peltier, Scott J. ;
Petersen, Steven E. ;
Riedl, Valentin ;
Rombouts, Serge A. R. B. ;
Rypma, Bart ;
Schlaggar, Bradley L. ;
Schmidt, Sein ;
Seidler, Rachael D. ;
Siegle, Greg J. ;
Sorg, Christian ;
Teng, Gao-Jun ;
Veijola, Juha ;
Villringer, Arno ;
Walter, Martin ;
Wang, Lihong ;
Weng, Xu-Chu ;
Whitfield-Gabrieli, Susan ;
Williamson, Peter ;
Windischberger, Christian .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (10) :4734-4739
[9]  
Committee on Issues in the Transborder Flow of Scientific Data and National Research Council, 1997, BITS POW ISS GLOB AC
[10]   VertNet: A New Model for Biodiversity Data Sharing [J].
Constable, Heather ;
Guralnick, Robert ;
Wieczorek, John ;
Spencer, Carol ;
Peterson, A. Townsend .
PLOS BIOLOGY, 2010, 8 (02)