Epigenomic Modification and Epigenetic Regulation in Rice

被引:24
作者
Zhao, Yu [2 ]
Zhou, Dao-Xiu [1 ]
机构
[1] Univ Paris 11, Inst Biol Plantes, F-91405 Orsay, France
[2] Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Wuhan 430070, Peoples R China
关键词
Epigenetics; Epigenomics; Oryza sativa; ORYZA-SATIVA L; DOMAIN-CONTAINING GENE; DNA METHYLATION; RETROTRANSPOSON TOS17; ARABIDOPSIS-THALIANA; HISTONE METHYLATION; POLYCOMB GROUP; METHYLTRANSFERASE GENES; CHROMATIN MODIFICATION; TRANSPOSABLE ELEMENTS;
D O I
10.1016/j.jgg.2012.02.009
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Epigenomes including genome-wide histone modification and DNA methylation profiles are important for genome activity and for defining gene expression patterns of plant development and responses to various environmental conditions. Rice is the most important crop plant and serves as a model for cereal genomics. Rice epigenomic landscape is emerging and the function of chromatin modification regulators in gene expression, transposon repression and plant development is being characterized. Epigenomic variation that gives rise to stable or transgenerational heritable epialleles related to variation of important agronomical traits or stress responses is being characterized in rice. Implication of epigenomic variation in rice heterosis is being exploited.
引用
收藏
页码:307 / 315
页数:9
相关论文
共 82 条
[1]   Epigenetic inheritance in rice plants [J].
Akimoto, Keiko ;
Katakami, Hatsue ;
Kim, Hyun-Jung ;
Ogawa, Emiko ;
Sano, Cecile M. ;
Wada, Yuko ;
Sano, Hiroshi .
ANNALS OF BOTANY, 2007, 100 (02) :205-217
[2]   Paramutation in maize: RNA mediated trans-generational gene silencing [J].
Arteaga-Vazquez, Mario Alberto ;
Chandler, Vicki Lynn .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2010, 20 (02) :156-163
[3]   Chromatin modification and remodeling during early seed development [J].
Baroux, Celia ;
Pien, Stephane ;
Grossniklaus, Ueli .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2007, 17 (06) :473-479
[4]   Spontaneous epigenetic variation in the Arabidopsis thaliana methylome [J].
Becker, Claude ;
Hagmann, Joerg ;
Mueller, Jonas ;
Koenig, Daniel ;
Stegle, Oliver ;
Borgwardt, Karsten ;
Weigel, Detlef .
NATURE, 2011, 480 (7376) :245-U127
[5]   The complex language of chromatin regulation during transcription [J].
Berger, Shelley L. .
NATURE, 2007, 447 (7143) :407-412
[6]   In search of the molecular basis of heterosis [J].
Birchler, JA ;
Auger, DL ;
Riddle, NC .
PLANT CELL, 2003, 15 (10) :2236-2239
[7]   Transgenerational Adaptation of Arabidopsis to Stress Requires DNA Methylation and the Function of Dicer-Like Proteins [J].
Boyko, Alex ;
Blevins, Todd ;
Yao, Youli ;
Golubov, Andrey ;
Bilichak, Andriy ;
Ilnytskyy, Yaroslav ;
Hollander, Jens ;
Meins, Frederick, Jr. ;
Kovalchuk, Igor .
PLOS ONE, 2010, 5 (03)
[8]   Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes [J].
Cao, XF ;
Jacobsen, SE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 :16491-16498
[9]   Gardening the genome:: DNA methylation in Arabidopsis thaliana [J].
Chan, SWL ;
Henderson, IR ;
Jacobsen, SE .
NATURE REVIEWS GENETICS, 2005, 6 (05) :351-360
[10]   Polycomb protein Ezh2 regulates pancreatic β-cell Ink4a/Arf expression and regeneration in diabetes mellitus [J].
Chen, Hainan ;
Gu, Xueying ;
Su, I-hsin ;
Bottino, Rita ;
Contreras, Juan L. ;
Tarakhovsky, Alexander ;
Kim, Seung K. .
GENES & DEVELOPMENT, 2009, 23 (08) :975-985