DNA barcoding common non-native freshwater fish species in Turkey: Low genetic diversity but high population structuring

被引:24
作者
Keskin, Emre [1 ,2 ]
Agdamar, Sevan [3 ]
Tarkan, Ali Serhan [3 ]
机构
[1] Ankara Univ, Fac Agr, Dept Fisheries & Aquaculture, TR-06100 Ankara, Turkey
[2] Ankara Univ, Inst Biotechnol, TR-06100 Ankara, Turkey
[3] Mugla Sitki Kocman Univ, Fac Fisheries, Mugla, Turkey
来源
MITOCHONDRIAL DNA | 2013年 / 24卷 / 03期
关键词
Cytochrome c oxidase I; DNA barcoding; Carassius gibelio; invasion; Pseudorasbora parva; CARASSIUS-GIBELIO; EVOLUTIONARY GENETICS; PSEUDORASBORA-PARVA; NATIVE FISH; INVASION; CARP; BLOCH;
D O I
10.3109/19401736.2012.748041
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Negative impacts of introduced non-native freshwater species on native species have been increasingly recognized in the world as well as in Turkey. However, there has been relatively little attention on genetic characterization of alien freshwater fishes in their non-native distribution range and virtually no study has been conducted in Turkey despite its crucial importance in invasion biology. The purpose of this study was to elucidate genetic diversity of common non-native freshwater fish species (Carassius auratus, Carassius gibelio, Gambusia holbrooki, Lepomis gibbosus, and Pseudorasbora parva) using mitochondrial Cytochrome c oxidase subunit I (COI) sequences; known as DNA barcodes. Through the whole dataset, seventeen haplotypes (haplotype diversity = 0.8908) were found containing 145 COI sequences. Mean Kimura two-parameter genetic distances were calculated as 0.209 for interspecific distance and 0.009 for intraspecific variation. COI barcode diversity among populations of the same species was found to be low, especially for C. gibelio, G. holbrooki, and L. gibbosus populations which were 0.5%, 0.6%, and 0.3%, respectively. Our results clearly demonstrate the effectiveness of the DNA barcoding approach both for identifications at species level and revealing intraspecific variation among populations, which could be used for effective management measures for invasive species and conservation strategies for indigenous and endemic species.
引用
收藏
页码:276 / 287
页数:12
相关论文
共 37 条
[1]   Invasion of freshwater bodies in the Marmara region (northwestern Turkey) by nonnative gibel carp, Carassius gibelio (Bloch, 1782) [J].
Aydin, Hamdi ;
Gaygusuz, Ozcan ;
Tarkan, Ali Serhan ;
Top, Nildeniz ;
Emiroglu, Ozgur ;
Gaygusuz, Cigdem Gursoy .
TURKISH JOURNAL OF ZOOLOGY, 2011, 35 (06) :829-836
[2]   Low diversity and high levels of population genetic structuring in introduced eastern mosquitofish (Gambusia holbrooki) in the greater Melbourne area, Australia [J].
Ayres, Renae M. ;
Pettigrove, Vincent J. ;
Hoffmann, Ary A. .
BIOLOGICAL INVASIONS, 2010, 12 (11) :3727-3744
[3]   Median-joining networks for inferring intraspecific phylogenies [J].
Bandelt, HJ ;
Forster, P ;
Röhl, A .
MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (01) :37-48
[4]  
Barrett S.C..H., 1991, GENETICS CONSERVATIO, P1
[5]   Genetic relationships among pumpkinseed (Lepomis gibbosus) ecomorphs in freshwater reservoirs of Portugal [J].
Bhagat, Yakuta ;
Wilson, Chris C. ;
Fox, Michael G. ;
Ferreira, M. Teresa .
ECOLOGY OF FRESHWATER FISH, 2011, 20 (02) :287-298
[6]   Genetically monomorphic invasive populations of the rapa whelk, Rapana venosa [J].
Chandler, E. A. ;
McDowell, J. R. ;
Graves, J. E. .
MOLECULAR ECOLOGY, 2008, 17 (18) :4079-4091
[7]   DNA barcodes: recent successes and future prospects [J].
Dasmahapatra, K. K. ;
Mallet, J. .
HEREDITY, 2006, 97 (04) :254-255
[8]   Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions [J].
Dlugosch, K. M. ;
Parker, I. M. .
MOLECULAR ECOLOGY, 2008, 17 (01) :431-449
[9]  
Ekmekci Fitnat Guler, 2006, Turkish Journal of Zoology, V30, P329
[10]   Arlequin (version 3.0): An integrated software package for population genetics data analysis [J].
Excoffier, Laurent ;
Laval, Guillaume ;
Schneider, Stefan .
EVOLUTIONARY BIOINFORMATICS, 2005, 1 :47-50