A guide to microRNA-mediated gene silencing

被引:51
作者
Huberdeau, Miguel Quevillon [1 ,2 ]
Simard, Martin J. [1 ,2 ]
机构
[1] Univ Laval, Res Ctr, CHU Quebec, Oncol Div,St Patrick Res Grp Basic Oncol, Quebec City, PQ G1R 3S3, Canada
[2] Laval Univ, Canc Res Ctr, Quebec City, PQ, Canada
基金
加拿大健康研究院; 加拿大自然科学与工程研究理事会;
关键词
gene regulation; microRNA target; microRNA target validation; miRISC; RNA-BINDING PROTEIN; SEQUENCE-SPECIFIC INHIBITION; ARGONAUTE PROTEINS; TARGET SITES; IDENTIFICATION; PROTEOMICS; REVEALS; HUR; DETERMINANTS; TRANSLATION;
D O I
10.1111/febs.14666
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
As an important regulator of gene expression in eukaryotes, microRNAs (miRNAs) have been subject to extensive research to understand their pleiotropic roles in development and pathological processes. Here, we review strategies that have been developed to map microRNA-target interactions and the most effective methods to attribute post-transcriptional gene regulation through miRNA-mediated silencing. We further discuss the importance of the biological context for silencing.
引用
收藏
页码:642 / 652
页数:11
相关论文
共 94 条
[41]   Short RNA Duplexes Elicit RIG-I-Mediated Apoptosis in a Cell Type-and Length-Dependent Manner [J].
Ishibashi, Osamu ;
Ali, Md. Moksed ;
Luo, Shan-Shun ;
Ohba, Takashi ;
Katabuchi, Hidetaka ;
Takeshita, Toshiyuki ;
Takizawa, Toshihiro .
SCIENCE SIGNALING, 2011, 4 (198)
[42]   The Functions of MicroRNAs: mRNA Decay and Translational Repression [J].
Iwakawa, Hiro-oki ;
Tomari, Yukihide .
TRENDS IN CELL BIOLOGY, 2015, 25 (11) :651-665
[43]   Small indels induced by CRISPR/Cas9 in the 5′ region of microRNA lead to its depletion and Drosha processing retardance [J].
Jiang, Qian ;
Meng, Xing ;
Meng, Lingwei ;
Chang, Nannan ;
Xiong, Jingwei ;
Cao, Huiqing ;
Liang, Zicai .
RNA BIOLOGY, 2014, 11 (10) :1243-1249
[44]   Transfection of microRNA Mimics Should Be Used with Caution [J].
Jin, Hyun Yong ;
Gonzalez-Martin, Alicia ;
Miletic, Ana V. ;
Lai, Maoyi ;
Knight, Sarah ;
Sabouri-Ghomi, Mohsen ;
Head, Steven R. ;
Macauley, Matthew S. ;
Rickert, Robert C. ;
Xiao, Changchun .
FRONTIERS IN GENETICS, 2015, 6
[45]   Human MicroRNA targets [J].
John, B ;
Enright, AJ ;
Aravin, A ;
Tuschl, T ;
Sander, C ;
Marks, DS .
PLOS BIOLOGY, 2004, 2 (11) :1862-1879
[46]   NON-CODING RNA Towards a molecular understanding of microRNA-mediated gene silencing [J].
Jonas, Stefanie ;
Izaurralde, Elisa .
NATURE REVIEWS GENETICS, 2015, 16 (07) :421-433
[47]   MicroRNAs and their regulatory roles in plants [J].
Jones-Rhoades, Matthew W. ;
Bartel, David P. ;
Bartel, Bonnie .
ANNUAL REVIEW OF PLANT BIOLOGY, 2006, 57 :19-53
[48]  
Jovanovic M, 2010, NAT METHODS, V7, P837, DOI [10.1038/NMETH.1504, 10.1038/nmeth.1504]
[49]   DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions [J].
Karagkouni, Dimitra ;
Paraskevopoulou, Maria D. ;
Chatzopoulos, Serafeim ;
Vlachos, Ioannis S. ;
Tastsoglou, Spyros ;
Kanellos, Ilias ;
Papadimitriou, Dimitris ;
Kavakiotis, Ioannis ;
Maniou, Sofia ;
Skoufos, Giorgos ;
Vergoulis, Thanasis ;
Dalamagas, Theodore ;
Hatzigeorgiou, Artemis G. .
NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) :D239-D245
[50]   A biochemical approach to identifying microRNA targets [J].
Karginov, Fedor V. ;
Conaco, Cecilia ;
Xuan, Zhenyu ;
Schmidt, Bryan H. ;
Parker, Joel S. ;
Mandel, Gail ;
Hannon, Gregory J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (49) :19291-19296