Scientific Workflow Management in Proteomics

被引：15

作者：

de Bruin, Jeroen S. ^{[1
,2
]}

Deelder, Andre M. ^{[1
]}

Palmblad, Magnus ^{[1
]}

机构：

[1] Leiden Univ, Med Ctr, Dept Parasitol, Biomol Mass Spectrometry Unit, NL-2300 RC Leiden, Netherlands

[2] Med Univ Vienna, Ctr Med Stat Informat & Intelligent Syst, Sect Med Expert & Knowledge Based Syst, A-1090 Vienna, Austria

来源：

MOLECULAR & CELLULAR PROTEOMICS | 2012年 / 11卷 / 07期

关键词：

MASS-SPECTROMETRY DATA; CHROMATOGRAPHIC ALIGNMENT; TANDEM; TOOLS; BIOINFORMATICS; IMPLEMENTATION; IDENTIFICATION; PEPTIDES; ACCURACY; PROTEINS;

D O I：

10.1074/mcp.M111.010595

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Data processing in proteomics can be a challenging endeavor, requiring extensive knowledge of many different software packages, all with different algorithms, data format requirements, and user interfaces. In this article we describe the integration of a number of existing programs and tools in Taverna Workbench, a scientific workflow manager currently being developed in the bioinformatics community. We demonstrate how a workflow manager provides a single, visually clear and intuitive interface to complex data analysis tasks in proteomics, from raw mass spectrometry data to protein identifications and beyond. Molecular & Cellular Proteomics 11: 10.1074/mcp.M111.010595, 1-9, 2012.

引用

页数：10

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