2D or Not 2D? Testing the Utility of 2D Vs. 3D Landmark Data in Geometric Morphometrics of the Sculpin Subfamily Oligocottinae (Pisces; Cottoidea)

被引:71
|
作者
Buser, Thaddaeus J. [1 ]
Sidlauskas, Brian L. [1 ]
Summers, Adam P. [2 ]
机构
[1] Oregon State Univ, Dept Fisheries & Wildlife, 104 Nash Hall, Corvallis, OR 97331 USA
[2] Univ Washington, Friday Harbor Labs, Dept Biol, Friday Harbor, WA 98250 USA
来源
ANATOMICAL RECORD-ADVANCES IN INTEGRATIVE ANATOMY AND EVOLUTIONARY BIOLOGY | 2018年 / 301卷 / 05期
基金
美国国家科学基金会;
关键词
geometric morphometrics; ichthyology; 3D morphometrics; ecomorphology; macroevolution; MORPHOLOGICAL EVOLUTION; R PACKAGE; SHAPE; DIVERSIFICATION; FISHES; SCIURIDAE; RODENTIA; ONTOGENY; ECOLOGY; MODELS;
D O I
10.1002/ar.23752
中图分类号
R602 [外科病理学、解剖学]; R32 [人体形态学];
学科分类号
100101 ;
摘要
We contrast 2D vs. 3D landmark-based geometric morphometrics in the fish subfamily Oligocottinae by using 3D landmarks from CT-generated models and comparing the morphospace of the 3D landmarks to one based on 2D landmarks from images. The 2D and 3D shape variables capture common patterns across taxa, such that the pairwise Procrustes distances among taxa correspond and the trends captured by principal component analysis are similar in the xy plane. We use the two sets of landmarks to test several ecomorphological hypotheses from the literature. Both 2D and 3D data reject the hypothesis that head shape correlates significantly with the depth at which a species is commonly found. However, in taxa where shape variation in the z-axis is high, the 2D shape variables show sufficiently strong distortion to influence the outcome of the hypothesis tests regarding the relationship between mouth size and feeding ecology. Only the 3D data support previous studies which showed that large mouth sizes correlate positively with high percentages of elusive prey in the diet. When used to test for morphological divergence, 3D data show no evidence of divergence, while 2D data show that one clade of oligocottines has diverged from all others. This clade shows the greatest degree of z-axis body depth within Oligocottinae, and we conclude that the inability of the 2D approach to capture this lateral body depth causes the incongruence between 2D and 3D analyses. Anat Rec, 301:806-818, 2018. (c) 2017 Wiley Periodicals, Inc.
引用
收藏
页码:806 / 818
页数:13
相关论文
共 50 条
  • [1] Variability and asymmetry in the shape of the spiny dogfish vagina revealed by 2D and 3D geometric morphometrics
    Hedrick, B. P.
    Antalek-Schrag, P.
    Conith, A. J.
    Natanson, L. J.
    Brennan, P. L. R.
    JOURNAL OF ZOOLOGY, 2019, 308 (01) : 16 - 27
  • [2] Testing accuracy in 2D and 3D geometric morphometric methods for cut mark identification and classification
    Courtenay, Lloyd A.
    Angel Mate-Gonzalez, Miguel
    Aramendi, Julia
    Yravedra, Jose
    Gonzalez-Aguilera, Diego
    Dominguez-Rodrigo, Manuel
    PEERJ, 2018, 6
  • [3] Measuring linearity of curves in 2D and 3D
    Rosin, Paul L.
    Pantovic, Jovanka
    Zunic, Jovisa
    PATTERN RECOGNITION, 2016, 49 : 65 - 78
  • [4] Covariance Trees for 2D and 3D Processing
    Guillemot, Thierry
    Almansa, Andres
    Boubekeur, Tamy
    2014 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2014, : 556 - 563
  • [5] Distance sampling detection functions: 2D or not 2D?
    Borchers, David Louis
    Cox, Martin James
    BIOMETRICS, 2017, 73 (02) : 593 - 602
  • [6] The Contribution of 2D and 3D Geometric Morphometrics to Lithic Taxonomies: Testing Discrete Categories of Backed Flakes from Recurrent Centripetal Core Reduction
    Bustos-Perez, Guillermo
    Gravina, Brad
    Brenet, Michel
    Romagnoli, Francesca
    JOURNAL OF PALEOLITHIC ARCHAEOLOGY, 2024, 7 (01)
  • [7] AutoMorph: Accelerating morphometrics with automated 2D and 3D image processing and shape extraction
    Hsiang, Allison Y.
    Nelson, Kaylea
    Elder, Leanne E.
    Sibert, Elizabeth C.
    Kahanamoku, Sara S.
    Burke, Janet E.
    Kelly, Abigail
    Liu, Yusu
    Hull, Pincelli M.
    METHODS IN ECOLOGY AND EVOLUTION, 2018, 9 (03): : 605 - 612
  • [8] A landmark-free analysis of the pelvic girdle in Sulawesi ricefishes (Adrianichthyidae): How 2D and 3D geometric morphometrics can complement each other in the analysis of a complex structure
    Spanke, Tobias
    Gabelaia, Mariam
    Flury, Jana M.
    Hilgers, Leon
    Wantania, Letha Louisiana
    Misof, Bernhard
    Wipfler, Benjamin
    Wowor, Daisy
    Mokodongan, Daniel F.
    Herder, Fabian
    Schwarzer, Julia
    ECOLOGY AND EVOLUTION, 2023, 13 (10):
  • [9] Estimation of 3D rotation of femur in 2D hip radiographs
    Vaananen, Sami P.
    Isaksson, Hanna
    Waarsing, Jan H.
    Zadpoor, Amir Abbas
    Jurvelin, Jukka S.
    Weinans, Harrie
    JOURNAL OF BIOMECHANICS, 2012, 45 (13) : 2279 - 2283
  • [10] 2D/3D SEMANTIC CATEGORIZATION OF VISUAL OBJECTS
    Petre, Raluca Diana
    Zaharia, Titus
    2012 PROCEEDINGS OF THE 20TH EUROPEAN SIGNAL PROCESSING CONFERENCE (EUSIPCO), 2012, : 2387 - 2391