Efficient Federated Tumor Segmentation via Normalized Tensor Aggregation and Client Pruning

被引:3
作者
Yin, Youtan [2 ]
Yang, Hongzheng [3 ]
Quande, Liu [1 ]
Jiang, Meirui [1 ]
Chen, Cheng [1 ]
Dou, Qi [1 ]
Heng, Pheng-Ann [1 ,4 ]
机构
[1] Chinese Univ Hong Kong, Dept Comp Sci & Engn, Hong Kong, Peoples R China
[2] Zhejiang Univ, Dept Comp Sci & Technol, Hangzhou, Peoples R China
[3] Beihang Univ, Dept Comp Sci & Engn, Beijing, Peoples R China
[4] Chinese Acad Sci, Guangdong Hong Kong Macao Joint Lab Human Machine, Shenzhen Inst Adv Technol, Shenzhen, Peoples R China
来源
BRAINLESION: GLIOMA, MULTIPLE SCLEROSIS, STROKE AND TRAUMATIC BRAIN INJURIES, BRAINLES 2021, PT II | 2022年 / 12963卷
基金
中国国家自然科学基金;
关键词
Federated learning; Brain tumor segmentation; nnU-Net; Test-time adaptation;
D O I
10.1007/978-3-031-09002-8_38
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Federated learning, which trains a generic model for different institutions without sharing their data, is a new trend to avoid training with centralized data, which is often impossible due to privacy issues. The Federated Tumor Segmentation (FeTS) Challenge 2021 has two tasks for participants. Task 1 aims at effective weight aggregation methods given a pre-defined segmentation algorithm for clients training. While task 2 looks for robust segmentation algorithms evaluated on unseen data from remote independent institutions. In federated learning, heterogeneity in the local clients' datasets and training speeds results in non-negligible variations between clients in each aggregation round. The naive weighted average aggregation of such models causes objective inconsistency. As for task 1, we devise a tensor normalization approach to solve the objective inconsistency. Furthermore, we propose a client pruning strategy to alleviate the negative impact on the convergence time caused by the uneven training time among local clients. Our method achieves a projected convergence score of 74.32% during the training phase. For task 2, we dynamically adapt model weights at test time by minimizing the entropy loss to address the domain shifting problem for unseen data evaluation. Our method finally achieves dice scores of 90.67%, 86.23%, and 78.90% for the whole tumor, tumor core, and enhancing tumor, respectively, on the task's validation data. Overall, the proposed solution ranked first for task 2 and third for task 1 in the FeTS Challenge 2021.
引用
收藏
页码:433 / 443
页数:11
相关论文
共 32 条
[1]   HIPAA regulations - A new era of medical-record privacy? [J].
Annas, GJ .
NEW ENGLAND JOURNAL OF MEDICINE, 2003, 348 (15) :1486-1490
[2]  
Bakas S., 2017, SEGMENTATION LABELS, DOI DOI 10.7937/K9/TCIA.2017.KLXWJJ1Q
[3]  
Bakas S., 2018, IDENTIFYING BEST MAC
[4]   Data Descriptor: Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features [J].
Bakas, Spyridon ;
Akbari, Hamed ;
Sotiras, Aristeidis ;
Bilello, Michel ;
Rozycki, Martin ;
Kirby, Justin S. ;
Freymann, John B. ;
Farahani, Keyvan ;
Davatzikos, Christos .
SCIENTIFIC DATA, 2017, 4
[5]   Source-Free Domain Adaptive Fundus Image Segmentation with Denoised Pseudo-Labeling [J].
Chen, Cheng ;
Liu, Quande ;
Jin, Yueming ;
Dou, Qi ;
Heng, Pheng-Ann .
MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2021, PT V, 2021, 12905 :225-235
[6]  
Daiqing Li, 2020, Medical Image Computing and Computer Assisted Intervention - MICCAI 2020. 23rd International Conference. Proceedings. Lecture Notes in Computer Science (LNCS 12261), P159, DOI 10.1007/978-3-030-59710-8_16
[7]   Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study [J].
Dou, Qi ;
So, Tiffany Y. ;
Jiang, Meirui ;
Liu, Quande ;
Vardhanabhuti, Varut ;
Kaissis, Georgios ;
Li, Zeju ;
Si, Weixin ;
Lee, Heather H. C. ;
Yu, Kevin ;
Feng, Zuxin ;
Dong, Li ;
Burian, Egon ;
Jungmann, Friederike ;
Braren, Rickmer ;
Makowski, Marcus ;
Kainz, Bernhard ;
Rueckert, Daniel ;
Glocker, Ben ;
Yu, Simon C. H. ;
Heng, Pheng Ann .
NPJ DIGITAL MEDICINE, 2021, 4 (01)
[8]  
Guo PF, 2021, PROC CVPR IEEE, P2423, DOI [10.1109/cvpr46437.2021.00245, 10.1109/CVPR46437.2021.00245]
[9]   nnU-Net for Brain Tumor Segmentation [J].
Isensee, Fabian ;
Jaeger, Paul F. ;
Full, Peter M. ;
Vollmuth, Philipp ;
Maier-Hein, Klaus H. .
BRAINLESION: GLIOMA, MULTIPLE SCLEROSIS, STROKE AND TRAUMATIC BRAIN INJURIES (BRAINLES 2020), PT II, 2021, 12659 :118-132
[10]   nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation [J].
Isensee, Fabian ;
Jaeger, Paul F. ;
Kohl, Simon A. A. ;
Petersen, Jens ;
Maier-Hein, Klaus H. .
NATURE METHODS, 2021, 18 (02) :203-+