Predicting health crises from early warning signs in patient medical records

被引:4
作者
Gumustop, Selin [1 ]
Gallo-Bernal, Sebastian [2 ]
McPeake, Fionnuala [2 ]
Briggs, Daniel [2 ]
Gee, Michael S. [2 ,3 ]
Pianykh, Oleg S. [2 ,3 ]
机构
[1] Tufts Univ, Sch Med, Boston, MA 02111 USA
[2] Massachusetts Gen Hosp, Dept Radiol, 55 Fruit St, Boston, MA 02114 USA
[3] Harvard Med Sch, Boston, MA 02115 USA
关键词
COVID-19;
D O I
10.1038/s41598-022-23900-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The COVID-19 global pandemic has caused unprecedented worldwide changes in healthcare delivery. While containment and mitigation approaches have been intensified, the progressive increase in the number of cases has overwhelmed health systems globally, highlighting the need for anticipation and prediction to be the basis of an efficient response system. This study demonstrates the role of population health metrics as early warning signs of future health crises. We retrospectively collected data from the emergency department of a large academic hospital in the northeastern United States from 01/01/2019 to 08/07/2021. A total of 377,694 patient records and 303 features were included for analysis. Departing from a multivariate artificial intelligence (AI) model initially developed to predict the risk of high-flow oxygen therapy or mechanical ventilation requirement during the COVID-19 pandemic, a total of 19 original variables and eight engineered features showing to be most predictive of the outcome were selected for further analysis. The temporal trends of the selected variables before and during the pandemic were characterized to determine their potential roles as early warning signs of future health crises. Temporal analysis of the individual variables included in the high-flow oxygen model showed that at a population level, the respiratory rate, temperature, low oxygen saturation, number of diagnoses during the first encounter, heart rate, BMI, age, sex, and neutrophil percentage demonstrated observable and traceable changes eight weeks before the first COVID-19 public health emergency declaration. Additionally, the engineered rule-based features built from the original variables also exhibited a pre-pandemic surge that preceded the first pandemic wave in spring 2020. Our findings suggest that the changes in routine population health metrics may serve as early warnings of future crises. This justifies the development of patient health surveillance systems, that can continuously monitor population health features, and alarm of new approaching public health crises before they become devastating.
引用
收藏
页数:12
相关论文
共 37 条
[1]   Antibodies to Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in All of Us Research Program Participants, 2 January to 18 March 2020 [J].
Althoff, Keri N. ;
Schlueter, David J. ;
Anton-Culver, Hoda ;
Cherry, James ;
Denny, Joshua C. ;
Thomsen, Isaac ;
Karlson, Elizabeth W. ;
Havers, Fiona P. ;
Cicek, Mine S. ;
Thibodeau, Stephen N. ;
Pinto, Ligia A. ;
Lowy, Douglas ;
Malin, Bradley A. ;
Ohno-Machado, Lucila ;
Williams, Carolyn ;
Goldstein, David ;
Kouame, Aymone ;
Ramirez, Andrea ;
Roman, Adrienne ;
Sharpless, Norman E. ;
Gebo, Kelly A. ;
Schully, Sheri D. .
CLINICAL INFECTIOUS DISEASES, 2022, 74 (04) :584-590
[2]   Review on COVID-19 diagnosis models based on machine learning and deep learning approaches [J].
Alyasseri, Zaid Abdi Alkareem ;
Al-Betar, Mohammed Azmi ;
Abu Doush, Iyad ;
Awadallah, Mohammed A. ;
Abasi, Ammar Kamal ;
Makhadmeh, Sharif Naser ;
Alomari, Osama Ahmad ;
Abdulkareem, Karrar Hameed ;
Adam, Afzan ;
Damasevicius, Robertas ;
Mohammed, Mazin Abed ;
Abu Zitar, Raed .
EXPERT SYSTEMS, 2022, 39 (03)
[3]   Evidence of SARS-CoV-2 RNA in an Oropharyngeal Swab Specimen, Milan, Italy, Early December 2019 [J].
Amendola, Antonella ;
Bianchi, Silvia ;
Gori, Maria ;
Colzani, Daniela ;
Canuti, Marta ;
Borghi, Elisa ;
Raviglione, Mario C. ;
Zuccotti, Gian Vincenzo ;
Tanzi, Elisabetta .
EMERGING INFECTIOUS DISEASES, 2021, 27 (02) :648-650
[4]  
Ayukekbong JA., 2020, CAN J INFECT CONTROL, V35, P157
[5]   Association between mobility patterns and COVID-19 transmission in the USA: a mathematical modelling study [J].
Badr, Hamada S. ;
Du, Hongru ;
Marshall, Maximilian ;
Dong, Ensheng ;
Squire, Marietta M. ;
Gardner, Lauren M. .
LANCET INFECTIOUS DISEASES, 2020, 20 (11) :1247-1254
[6]   Serologic Testing of US Blood Donations to Identify Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)-Reactive Antibodies: December 2019-January 2020 [J].
Basavaraju, Sridhar, V ;
Patton, Monica E. ;
Grimm, Kacie ;
Rasheed, Mohammed Ata Ur ;
Lester, Sandra ;
Mills, Lisa ;
Stumpf, Megan ;
Freeman, Brandi ;
Tamin, Azaibi ;
Harcourt, Jennifer ;
Schiffer, Jarad ;
Semenova, Vera ;
Li, Han ;
Alston, Bailey ;
Ategbole, Muyiwa ;
Bolcen, Shanna ;
Boulay, Darbi ;
Browning, Peter ;
Cronin, Li ;
David, Ebenezer ;
Desai, Rita ;
Epperson, Monica ;
Gorantla, Yamini ;
Jia, Tao ;
Maniatis, Panagiotis ;
Moss, Kimberly ;
Ortiz, Kristina ;
Park, So Hee ;
Patel, Palak ;
Qin, Yunlong ;
Steward-Clark, Evelene ;
Tatum, Heather ;
Vogan, Andrew ;
Zellner, Briana ;
Drobeniuc, Jan ;
Sapiano, Matthew R. P. ;
Havers, Fiona ;
Reed, Carrie ;
Gerber, Susan ;
Thornburg, Natalie J. ;
Stramer, Susan L. .
CLINICAL INFECTIOUS DISEASES, 2021, 72 (12) :E1004-E1009
[7]   COVID-19 and Excess All-Cause Mortality in the US and 18 Comparison Countries [J].
Bilinski, Alyssa ;
Emanuel, Ezekiel J. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2020, 324 (20) :2100-2102
[8]   Covid-19-Implications for the Health Care System [J].
Blumenthal, David ;
Fowler, Elizabeth J. ;
Abrams, Melinda ;
Collins, Sara R. .
NEW ENGLAND JOURNAL OF MEDICINE, 2020, 383 (15) :1483-1488
[9]   Random forests [J].
Breiman, L .
MACHINE LEARNING, 2001, 45 (01) :5-32
[10]   XGBoost: A Scalable Tree Boosting System [J].
Chen, Tianqi ;
Guestrin, Carlos .
KDD'16: PROCEEDINGS OF THE 22ND ACM SIGKDD INTERNATIONAL CONFERENCE ON KNOWLEDGE DISCOVERY AND DATA MINING, 2016, :785-794