Development of Large-Scale Excited-State Calculations Based on the Divide-and-Conquer Time-Dependent Density Functional Tight-Binding Method

被引:19
作者
Komoto, Nana [1 ]
Yoshikawa, Takeshi [1 ]
Ono, Junichi [2 ]
Nishimura, Yoshifumi [2 ]
Nakai, Hiromi [1 ,2 ,3 ]
机构
[1] Waseda Univ, Dept Chem & Biochem, Sch Adv Sci & Engn, Shinjuku Ku, 3-4-1 Okubo, Tokyo 1698555, Japan
[2] Waseda Univ, Waseda Res Inst Sci & Engn, Shinjuku Ku, 3-4-1 Okubo, Tokyo 1698555, Japan
[3] Kyoto Univ, ESICB, Kyoto 6158520, Japan
基金
日本学术振兴会;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; CORRELATION-ENERGY; ION DIFFUSION; ABSORPTION; IMPLEMENTATION;
D O I
10.1021/acs.jctc.8b01214
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this study, the divide-and-conquer (DC) method was extended to time-dependent density functional tight-binding (TDDFTB) theory to enable excited-state calculations of large systems and is denoted by DC-TDDFTB. The efficient diagonalization algorithms of TDDFTB and DC-TDDFTB methods were implemented into our in-house program. Test calculations of polyethylene aldehyde and p-coumaric acid, a pigment in photoactive yellow protein, in water demonstrate the high accuracy and efficiency of the developed DC-TDDFTB method. Furthermore, the (TD)-DFTB metadynamics simulations of acridinium in the ground and excited states give reasonable pK(a) values compared with the corresponding experimental values.
引用
收藏
页码:1719 / 1727
页数:9
相关论文
共 48 条
  • [1] Is the divide-and-conquer Hartree-Fock method valid for calculations of delocalized systems?
    Akama, Tomoko
    Fujii, Atsuhiko
    Kobayashi, Masato
    Nakai, Hiromi
    [J]. MOLECULAR PHYSICS, 2007, 105 (19-22) : 2799 - 2804
  • [2] Implementation of divide-and-conquer method including Hartree-Fock exchange interaction
    Akama, Tomoko
    Kobayashi, Masato
    Nakai, Hiromi
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2007, 28 (12) : 2003 - 2012
  • [3] Electronic Temperature in Divide-and-Conquer Electronic Structure Calculation Revisited: Assessment and Improvement of Self-Consistent Field Convergence
    Akama, Tomoko
    Kobayashi, Masato
    Nakai, Hiromi
    [J]. INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2009, 109 (12) : 2706 - 2713
  • [4] [Anonymous], 2016, AMBER16
  • [5] Casida M. E., 1995, RECENT ADV DENSITY F, DOI [10.1142/9789812830586, DOI 10.1142/9789812830586]
  • [6] A new ONIOM implementation in Gaussian98.: Part I.: The calculation of energies, gradients, vibrational frequencies and electric field derivatives
    Dapprich, S
    Komáromi, I
    Byun, KS
    Morokuma, K
    Frisch, MJ
    [J]. JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 1999, 461 : 1 - 21
  • [7] ITERATIVE CALCULATION OF A FEW OF LOWEST EIGENVALUES AND CORRESPONDING EIGENVECTORS OF LARGE REAL-SYMMETRIC MATRICES
    DAVIDSON, ER
    [J]. JOURNAL OF COMPUTATIONAL PHYSICS, 1975, 17 (01) : 87 - 94
  • [8] Density functional tight binding
    Elstner, Marcus
    Seifert, Gotthard
    [J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 2014, 372 (2011):
  • [9] Fan G., 2013, COMMUN COMPUT CHEM, V1, P124, DOI DOI 10.4208/CICC.2013.V1.N2.3
  • [10] Friedrich J, 2007, J CHEM PHYS, V126