Absorption-energy calculations of chlorophyll a and b with an explicit solvent model

被引:34
作者
Saito, Keisuke [1 ,2 ]
Suzuki, Takumi [1 ]
Ishikita, Hiroshi [1 ,2 ]
机构
[1] Univ Tokyo, Dept Appl Chem, Bunkyo Ku, 7-3-1 Hongo, Tokyo 1138654, Japan
[2] Univ Tokyo, Res Ctr Adv Sci & Technol, Meguro Ku, 4-6-1 Komaba, Tokyo 1538904, Japan
关键词
Photosynthesis; Light harvesting complex; I nhomogeneous broadening; Long-range correction; Ligand coordination; Site energy; LIGHT-HARVESTING COMPLEX; PHOTOSYSTEM-II; EXCITED-STATES; SITE-ENERGIES; MOLECULAR-DYNAMICS; CRYSTAL-STRUCTURE; ATOMIC CHARGES; CATIONIC STATE; BACTERIOCHLOROPHYLL; PAIR;
D O I
10.1016/j.jphotochem.2017.10.003
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The absorption energies of the Q(y) bands of chlorophylls a and b (Chla and Chlb) in organic solvents (acetone, diethyl ether, and ethanol) were calculated by combining molecular dynamics simulations and quantum mechanical/molecular mechanical approaches with an explicit solvent model. It was found that excitation-energy calculations by time-dependent density functional theory (DFT) using the CAM-B3LYP functional, following DFT geometry optimizations with the B3LYP functional, accurately reproduced the differences between the observed absorption energies of Chla/Chlb in each solvent. The calculated energies were within a root-mean-square deviation of 0.0014 eV from the observed values when the CAM-B3LYP-related parameter mu, which is associated with the long-range correlation, was set to 0.14. Calculations using mu = 0.14 also reproduced the observed transition-dipole strengths of the Q(y)-band moments, and the observed absorption spectra, with linewidths of similar to 0.05 eV. These results suggest that mu = 0.14 can be used for absorption-energy calculations for Chla and Chlb. (C) 2017 The Authors. Published by Elsevier B.V.
引用
收藏
页码:422 / 431
页数:10
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