Identification of vital regulatory genes with network pathways among Huntington's, Parkinson's, and Alzheimer's diseases

被引:3
作者
Kawsar, Md. [1 ]
Taz, Tasnimul Alam [1 ]
Paul, Bikash Kumar [1 ,2 ,3 ]
Ahmed, Kawsar [2 ,3 ]
Habib, Md. Ahsan [2 ]
Bhuyian, Touhid [1 ]
机构
[1] Daffodil Int Univ, Dept Software Engn, Dhaka, Bangladesh
[2] Mawlana Bhashani Sci & Technol Univ MBSTU, Dept Informat & Commun Technol ICT, Santosh 1902, Tangail, Bangladesh
[3] Mawlana Bhashani Sci & Technol Univ MBSTU, Grp Biophotomatix, Santosh 1902, Tangail, Bangladesh
来源
NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS | 2020年 / 9卷 / 01期
关键词
Huntington's disease; Parkinson's disease; Alzheimer's disease; PPI network; Topological properties; Pathway analysis; Co-expression network; Physical interaction network; Gene regulatory network; TARGETS; BRAIN;
D O I
10.1007/s13721-020-00257-4
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
In the world, Huntington's disease, Parkinson's disease, and Alzheimer's disease are reported as the most deadly diseases to issue common disorders for human beings. In state-of-the-art works, it is well studied that Huntington's disease (HD) and Parkinson's disease (PD) are affected by genetic factors and common motor system disorder, respectively. On the other hand, Alzheimer's disease (AD) is a neurodegenerative disorder which is categorized by age-related dementia, behavioral changes, and memory loss, etc. In the literature, it is also identified that lots of similar genetic factors are interrelated among these diseases. In this paper, our key objective is to screen out the most significant common gene targets among HD, PD, and AD diseases. Here, the analysis attempts to discover efficient drug design for reactive genes by analyzing the topological properties of protein-protein interaction (PPI) networks. Initially, the analysis is started by reducing the number of total reactive genes (around 37 common genes) through preprocessing and cross-linkage. Afterward, we have identified five most significant hub proteins among these three diseases based on degree value. Moreover, a gene regulatory network has been designed to explain molecular mechanisms that significantly help to discover drugs for targeted genes.
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页数:15
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