Antithrombin (AT) is the principal inhibitor of thrombin and other serine proteases of the coagulation cascade. AT has previously been prepared from human plasma (hpAT), and a transgenic variant from goat milk (tgAT) is now available. Two open-label, parallel pharmacokinetic studies in rats (n=18) and rabbits (n=18) compared plasma concentrations of hpAT and tgAT following intravenous administration; the efficacy of the two preparations in prolonging survival from bacterial-induced sepsis was compared in two open-label, randomised, placebo-controlled studies in rats (n=266). Maximum plasma concentrations were approximately dose-proportional and were similar for both hpAT and tgAT. The elimination of tgAT was faster than hpAT, and the t(1/2) of hpAT was longer than that of tgAT in both rats (0.85-1.92h versus 0.17-0.73h) and rabbits (19-38h versus 1.5-2.2h). Correspondingly, tgAT showed a lower area under the curve, mean residence time, pharmacokinetic response to dosing and a higher clearance rate. In a meta-analysis of the efficacy studies, the overall hazard ratio for death was 1.36 (tgAT:hpAT; p=0.06; 95% CI 0.99-1.86). HpAT and tgAT have differing pharmacokinetic properties in pre-clinical studies. Further research is necessary to establish whether this translates into efficacy differences in vivo and in the clinical therapy of sepsis. Copyright (C) 2008 John Wiley & Sons, Ltd.