Are all-atom any better than united-atom force fields for the description of liquid properties of alkanes?

被引:30
作者
da Silva, Guilherme C. Q. [1 ]
Silva, Gabriel M. [2 ]
Tavares, Frederico W. [3 ,4 ]
Fleming, Felipe P. [2 ]
Horta, Bruno A. C. [1 ]
机构
[1] Univ Fed Rio de Janeiro, Inst Quim, Ave Athos da Silveira Ramos 149,CT,Bl A-622, BR-21941909 Rio De Janeiro, RJ, Brazil
[2] Petrobras SA, CENPES, BR-21941909 Rio De Janeiro, RJ, Brazil
[3] Univ Fed Rio de Janeiro, Escola Quim EQ, Ave Athos da Silveira Ramos 149,CT,Bl A-622, BR-21941909 Rio De Janeiro, RJ, Brazil
[4] Univ Fed Rio de Janeiro, Programa Engn Quim PEQ COPPE, Ave Athos da Silveira Ramos 149,CT,Bl A-622, BR-21941909 Rio De Janeiro, RJ, Brazil
关键词
Force field; Molecular dynamics; Alkanes; Octane; Liquid properties; MOLECULAR-DYNAMICS SIMULATIONS; SURFACE-TENSION; FREE-ENERGIES; CONFORMATIONAL ENERGIES; TRANSFERABLE POTENTIALS; PHASE-EQUILIBRIA; CONDENSED-PHASE; OIL-DETACHMENT; NUCLEIC-ACIDS; OPLS-AA;
D O I
10.1007/s00894-020-04548-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Alkanes are a fundamental part in empirical force fields (FF) not only due to their technological relevance, but also due to the prevalence of alkane moieties in organic molecules, e.g., compounds containing a saturated carbon chain. Therefore, a good description of alkane interactions is crucial for determining the quality of a FF. In this study, the performance of 12 empirical force fields (FF) was evaluated in the context of reproducing liquid properties of alkanes. More specifically, n-octane was chosen as a reference compound since it is a liquid in a broad temperature range and it has numerous experimental data for thermodynamic, transport, and structural properties, as well as for their temperature dependencies. A normalized root-mean-square deviation (NRMSD) analysis was used to rank the force fields in their ability to reproduce the experimental data. Five out of the six best force fields considered were united-atom models. The GROMOS force field showed the smallest deviation in terms of NRMSD, followed by TRAPPE-EH, NERD, CHARMM-UA, TRAPPE-UA, and OPLS-UA. This overall better performance of the united-atom force fields indicates that complexity does not always bring quality.
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页数:17
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