Methyl 4-O-β-D-mannopyranosyl β-D-xylopyranoside

被引:4
作者
Zhang, Wenhui [1 ]
Oliver, Allen G. [1 ]
Vu, Henry M. [2 ]
Duman, John G. [2 ]
Serianni, Anthony S. [1 ]
机构
[1] Univ Notre Dame, Dept Chem & Biochem, Notre Dame, IN 46556 USA
[2] Univ Notre Dame, Dept Biol Sci, Notre Dame, IN 46556 USA
关键词
NEUTRON-DIFFRACTION REFINEMENT; CRYSTAL-STRUCTURES; LACTOSIDE;
D O I
10.1107/S0108270112046689
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Methyl beta-D-mannopyranosyl-(1 -> 4)-beta-D-xylopyranoside, C12H22O10, (I), crystallizes as colorless needles from water, with two crystallographically independent molecules, (IA) and (IB), comprising the asymmetric unit. The internal glycosidic linkage conformation in molecule (IA) is characterized by a phi' torsion angle (O5'(Man)-C1'(Man)-O1'(Man)-C4(Xyl); Man is mannose and Xyl is xylose) of -88.38 (17)degrees and a psi' torsion angle (C1'(Man)-O1'(Man)-C4(Xyl)-C5(Xyl)) of -149.22 (15)degrees, whereas the corresponding torsion angles in molecule (IB) are -89.82 (17) and -159.98 (14)degrees, respectively. Ring atom numbering conforms to the convention in which C1 denotes the anomeric C atom, and C5 and C6 denote the hydroxymethyl (-CH2OH) C atom in the beta-Xylp and beta-Manp residues, respectively. By comparison, the internal glycosidic linkage in the major disorder component of the structurally related disaccharide, methyl beta-D-galactopyranosyl-(1 -> 4)-beta-D-xylopyranoside), (II) [Zhang, Oliver & Serriani (2012). Acta Cryst. C68, o7-o11], is characterized by phi' = -85.7 (6)degrees and psi' = -141.6 (8)degrees. Inter-residue hydrogen bonding is observed between atoms O3(Xyl) and O5'(Man) in both (IA) and (IB) [O3(Xyl)center dot center dot center dot O5'(Man) internuclear distances = 2.7268 (16) and 2.6920 (17) angstrom, respectively], analogous to the inter-residue hydrogen bond detected between atoms O3(Xyl) and O5'(Gal) in (II). Exocyclic hydroxymethyl group conformation in the beta-Manp residue of (IA) is gauche-gauche, whereas that in the beta-Manp residue of (IB) is gauche-trans.
引用
收藏
页码:O502 / O506
页数:5
相关论文
共 22 条
[1]   CIF applications. XV. enCIFer: a program for viewing, editing and visualizing CIFs [J].
Allen, FH ;
Johnson, O ;
Shields, GP ;
Smith, BR ;
Towler, M .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2004, 37 :335-338
[2]  
Brandenburg K, 2009, DIAMOND
[3]  
Bruker, 2008, APEX2 SAINT
[4]  
Cason C. J., 2003, POV RAY
[5]   GENERAL DEFINITION OF RING PUCKERING COORDINATES [J].
CREMER, D ;
POPLE, JA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1975, 97 (06) :1354-1358
[6]  
Farrugia L.J., 1997, J. Appl. Crystallogr., V30, P565, DOI [10.1107/S0021889897003117, DOI 10.1107/S0021889897003117]
[7]   ON ENANTIOMORPH-POLARITY ESTIMATION [J].
FLACK, HD .
ACTA CRYSTALLOGRAPHICA SECTION A, 1983, 39 (NOV) :876-881
[8]   Determination of absolute structure using Bayesian statistics on Bijvoet differences [J].
Hooft, Rob W. W. ;
Straver, Leo H. ;
Spek, Anthony L. .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2008, 41 :96-103
[9]  
Hu XS, 2010, ACTA CRYSTALLOGR C, V66, pO67, DOI [10.1107/S0108270109055012, 10.1107/S010827010905501]
[10]   Heparan sulphate biosynthesis and disease [J].
Nadanaka, Satomi ;
Kitagawa, Hiroshi .
JOURNAL OF BIOCHEMISTRY, 2008, 144 (01) :7-14