Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T)

被引:1
作者
Schaffert, Lena [1 ]
Albersmeier, Andreas [1 ]
Bednarz, Hanna [2 ]
Niehaus, Karsten [2 ]
Kalinowski, Joern [1 ]
Rueckert, Christian [1 ]
机构
[1] Univ Bielefeld, CeBiTec, D-33615 Bielefeld, Germany
[2] Univ Bielefeld, D-33615 Bielefeld, Germany
来源
STANDARDS IN GENOMIC SCIENCES | 2013年 / 8卷 / 03期
关键词
aerobic; non-motile; Gram-positive; non-spore forming; non-hemolytic; heterotrophic; mesophilic; halotolerant; SP NOV; PROPOSAL; ACTINOBACTERIA; CLASSIFICATION; NOMENCLATURE; ANNOTATION; SYSTEM; TOOL;
D O I
10.4056/sigs.4057796
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Corynebacterium maris Coryn-1 Ben-Dov et al. 2009 is a member of the genus Corynebacterium which contains Gram-positive, non-spore forming bacteria with a high G+C content. C. maris was isolated from the mucus of the Scleractinian coral Fungia granulosa and belongs to the aerobic and non-haemolytic corynebacteria. It displays tolerance to salts (up to 10%) and is related to the soil bacterium Corynebacterium halotolerans. As this is a type strain in a subgroup of Corynebacterium without complete genome sequences, this project, describing the 2.78 Mbp long chromosome and the 45.97 kbp plasmid pCmaris1, with their 2,584 protein-coding and 67 RNA genes, will aid the Genomic Encyclopedia of Bacteria and Archaea project.
引用
收藏
页码:516 / 524
页数:9
相关论文
共 41 条
  • [1] Gene Ontology: tool for the unification of biology
    Ashburner, M
    Ball, CA
    Blake, JA
    Botstein, D
    Butler, H
    Cherry, JM
    Davis, AP
    Dolinski, K
    Dwight, SS
    Eppig, JT
    Harris, MA
    Hill, DP
    Issel-Tarver, L
    Kasarskis, A
    Lewis, S
    Matese, JC
    Richardson, JE
    Ringwald, M
    Rubin, GM
    Sherlock, G
    [J]. NATURE GENETICS, 2000, 25 (01) : 25 - 29
  • [2] Corynebacterium maris sp nov., a marine bacterium isolated from the mucus of the coral Fungia granulosa
    Ben-Dov, Eitan
    Ben Yosef, Dafna Zeevi
    Pavlov, Valentina
    Kushmaro, Ariel
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2009, 59 : 2458 - 2463
  • [3] Improved prediction of signal peptides: SignalP 3.0
    Bendtsen, JD
    Nielsen, H
    von Heijne, G
    Brunak, S
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2004, 340 (04) : 783 - 795
  • [4] Assignment of Brevibacterium stationis (ZoBell and Upham 1944) Breed 1953 to the genus Corynebacterium, as Corynebacterium stationis comb. nov., and emended description of the genus Corynebacterium to include isolates that can alkalinize citrate
    Bernard, Kathryn A.
    Wiebe, Deborah
    Burdz, Tamara
    Reimer, Aleisha
    Ng, Betty
    Singh, Cathleen
    Schindle, Samantha
    Pacheco, Ana Luisa
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 : 874 - 879
  • [5] Borodovsky Mark, 2003, Curr Protoc Bioinformatics, VChapter 4, DOI 10.1002/0471250953.bi0405s01
  • [6] Corynebacterium mooreparkense sp nov and Corynebacterium casei sp nov., isolated from the surface of a smear-ripened cheese
    Brennan, NM
    Brown, R
    Goodfellow, M
    Ward, AC
    Beresford, TP
    Simpson, PJ
    Fox, PF
    Cogan, TM
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 : 843 - 852
  • [7] Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction
    Bruno, WJ
    Socci, ND
    Halpern, AL
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (01) : 189 - 197
  • [8] Studies in the nomenclature and classification of the bacteria II the primary subdivisions of the schizomycetes
    Buchanan, RE
    [J]. JOURNAL OF BACTERIOLOGY, 1917, 2 (02) : 155 - 164
  • [9] The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
    Cole, J. R.
    Chai, B.
    Farris, R. J.
    Wang, Q.
    Kulam-Syed-Mohideen, A. S.
    McGarrell, D. M.
    Bandela, A. M.
    Cardenas, E.
    Garrity, G. M.
    Tiedje, J. M.
    [J]. NUCLEIC ACIDS RESEARCH, 2007, 35 : D169 - D172
  • [10] The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
    Cole, J. R.
    Wang, Q.
    Cardenas, E.
    Fish, J.
    Chai, B.
    Farris, R. J.
    Kulam-Syed-Mohideen, A. S.
    McGarrell, D. M.
    Marsh, T.
    Garrity, G. M.
    Tiedje, J. M.
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : D141 - D145