Functional module detection by functional flow pattern mining in protein interaction networks

被引:2
作者
Cho, Young-Rae [1 ]
Shi, Lei [1 ]
Zhang, Aidong [1 ]
机构
[1] SUNY Buffalo, Dept Comp Sci, Buffalo, NY 14260 USA
关键词
Interaction Network; Functional Module; Pattern Mining; Protein Interaction Network; Functional Flow;
D O I
10.1186/1471-2105-9-S10-O1
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页数:2
相关论文
共 7 条
[1]   Semantic integration to identify overlapping functional modules in protein interaction networks [J].
Cho, Young-Rae ;
Hwang, Woochang ;
Ramanathan, Murali ;
Zhang, Aidong .
BMC BIOINFORMATICS, 2007, 8 (1)
[2]   The use of edge-betweenness clustering to investigate biological function in protein interaction networks [J].
Dunn, R ;
Dudbridge, F ;
Sanderson, CM .
BMC BIOINFORMATICS, 2005, 6 (1)
[3]  
Harris MA, 2008, NUCLEIC ACIDS RES, V36, pD440, DOI 10.1093/nar/gkm883
[4]   MIPS:: analysis and annotation of genome information in 2007 [J].
Mewes, H. W. ;
Dietmann, S. ;
Frishman, D. ;
Gregory, R. ;
Mannhaupt, G. ;
Mayer, K. F. X. ;
Muensterkoetter, M. ;
Ruepp, A. ;
Spannagl, M. ;
Stuempflen, V. ;
Rattei, T. .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D196-D201
[5]   Uncovering the overlapping community structure of complex networks in nature and society [J].
Palla, G ;
Derenyi, I ;
Farkas, I ;
Vicsek, T .
NATURE, 2005, 435 (7043) :814-818
[6]   Network-based prediction of protein function [J].
Sharan, Roded ;
Ulitsky, Igor ;
Shamir, Ron .
MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1) :1-13
[7]  
Wang Haixun., 2002, P ACM SIGMOD INT C M, P394