Megaphylogeny resolves global patterns of mushroom evolution

被引：229

作者：

Varga, Torda ^{[1
]}

Krizsan, Krisztina ^{[1
]}

Foldi, Csenge ^{[1
]}

Dima, Balint ^{[2
]}

Sanchez-Garcia, Marisol ^{[3
]}

Sanchez-Ramirez, Santiago ^{[4
]}

Szollosi, Gergely J. ^{[5
]}

Szarkandi, Janos G. ^{[6
]}

Papp, Viktor ^{[7
]}

Albert, Laszlo ^{[8
]}

Andreopoulos, William ^{[9
]}

Angelini, Claudio ^{[10
,11
]}

Antonin, Vladimir ^{[12
]}

Barry, Kerrie W. ^{[9
]}

Bougher, Neale L. ^{[13
]}

Buchanan, Peter ^{[14
]}

Buyck, Bart ^{[15
]}

Bense, Viktoria ^{[1
]}

Catcheside, Pam ^{[16
]}

Chovatia, Mansi ^{[9
]}

Cooper, Jerry ^{[17
]}

Daemon, Wolfgang ^{[18
]}

Desjardin, Dennis ^{[19
]}

Finy, Peter ^{[20
]}

Geml, Jozsef ^{[21
]}

Haridas, Sajeet ^{[9
]}

Hughes, Karen ^{[22
]}

Justo, Alfredo ^{[3
]}

Karasinski, Dariusz ^{[23
]}

Kautmanova, Ivona ^{[24
]}

Kiss, Brigitta ^{[1
]}

Kocsube, Sandor ^{[6
]}

Kotiranta, Heikki ^{[25
]}

LaButti, Kurt M. ^{[9
]}

Lechner, Bernardo E. ^{[26
]}

Liimatainen, Kare ^{[27
]}

Lipzen, Anna ^{[9
]}

Lukacs, Zoltan ^{[28
]}

Mihaltcheva, Sirma ^{[9
]}

Morgado, Louis N. ^{[21
,41
]}

Niskanen, Tuula ^{[27
]}

Noordeloos, Machiel E. ^{[21
]}

Ohm, Robin A. ^{[29
]}

Ortiz-Santana, Beatriz ^{[30
]}

Ovrebo, Clark ^{[31
]}

Racz, Nikolett ^{[6
]}

Riley, Robert ^{[9
]}

Savchenko, Anton ^{[32
,42
]}

Shiryaev, Anton ^{[33
]}

Soop, Karl ^{[34
]}

机构：

[1] Hungarian Acad Sci, Biol Res Ctr, Synthet & Syst Biol Unit, Szeged, Hungary

[2] Eotvos Lorand Univ, Inst Biol, Dept Plant Anat, Budapest, Hungary

[3] Clark Univ, Worcester, MA 01610 USA

[4] Univ Toronto, Dept Ecol & Evolutionary Biol, Toronto, ON, Canada

[5] Eotvos Lorand Univ, Dept Biol Phys, MIA ELIE Lenduler Evolutionary Genom Res Grp, Budapest, Hungary

[6] Univ Szeged, Fac Sci & Informat, Dept Microbiol, Szeged, Hungary

[7] Szent Istvan Univ, Fac Hort Sci, Dept Bot, Budapest, Hungary

[8] Hungarian Mycol Soc, Budapest, Hungary

[9] US DOE, Joint Genome Inst, Walnut Creek, CA USA

[10] Via Cappuccini 78, Pordenone, Italy

[11] Jardin Botan Nacl Ma Moscoso, Santo Domingo, Dominican Rep

[12] Moravian Museum, Dept Bot, Brno, Czech Republic

[13] Western Australia Herbarium, Dept Biodivers Sci & Conservat, Kensington, WA, Australia

[14] Manaaki Whenua Landcare Res, Auckland, New Zealand

[15] Sorbonne Univ, Inst Systemat, CNRS, Museum Natl Hist Nat,ISYEB UMR 7205, Paris, France

[16] State Herbarium South Australia, Adelaide, SA, Australia

[17] Manaaki Whenua Landcare Res, Lincoln, New Zealand

[18] Oberfeldstr 9, St Georgen Bei Salzburg, Austria

[19] San Francisco State Univ, Dept Biol, San Francisco, CA 94132 USA

[20] Zsombolyai U 56, Szekesfehervar, Hungary

[21] Nat Biodivers Ctr, Leiden, Netherlands

[22] Univ Tennessee, Dept Ecol & Evolutionary Biol, Knoxville, TN USA

[23] Polish Acad Sci, Szafer Inst Bot, Dept Mycol, Krakow, Poland

[24] Slovak Natl Museum, Nat Hist Museum, Bratislava, Slovakia

[25] Finnish Environm Inst, Biodivers Unit, Helsinki, Finland

[26] Univ Buenos Aires, Inst Micol & Bot, CONICET, Buenos Aires, DF, Argentina

[27] Royal Bot Gardens, Jodrell Lab, Richmond, England

[28] Damjanich U 54, Budapest, Hungary

[29] Univ Utrecht, Dept Biol, Microbiol, Utrecht, Netherlands

[30] US Forest Serv, Ctr Forest Mycol Res, Northern Res Stn, Madison, WI USA

[31] Univ Cent Oklahoma, Dept Biol, Edmond, OK USA

[32] Univ Helsinki, Bot Museum, Helsinki, Finland

[33] Russian Acad Sci, Inst Plant & Anim Ecol, Ekaterinburg, Russia

[34] Swedish Museum Nat Hist, Dept Cryptogam Bot, Stockholm, Sweden

[35] Mendel Univ Brno, Fac Forestry & Wood Technol, Brno, Czech Republic

[36] Herbarium Rooseveltensis Amanitarum, Roosevelt, NJ USA

[37] New York Bot Garden, New York, NY USA

[38] Univ Calif Berkeley, Plant & Microbial Biol, Berkeley, CA 94720 USA

[39] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA

[40] Inst Natl Rech Agronom, Lab Excellence Adv Res Biol Tree & Forest Ecosyst, Champenoux, France

[41] Univ Oslo, Sect Genet & Evolutionary Biol, Oslo, Norway

[42] Univ Tartu, Inst Ecol & Earth Sci, Tartu, Estonia

[43] MTA SZTE Lendulet Fungal Pathogenic Mech Res Grp, Szeged, Hungary

来源：

NATURE ECOLOGY & EVOLUTION | 2019年 / 3卷 / 04期

基金：

欧洲研究理事会;

关键词：

PHYLOGENETIC ANALYSIS; FORMING FUNGI; EXPLOSIVE DIVERSIFICATION; ADAPTIVE RADIATION; EXTINCTION RATES; R PACKAGE; DIVERSITY; SPECIATION; LIKELIHOOD; BINARY;

D O I：

10.1038/s41559-019-0834-1

中图分类号：

Q14 [生态学（生物生态学）];

学科分类号：

071012 ; 0713 ;

摘要：

Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub) tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.

引用

页码：668 / 678

页数：11

共 97 条

[1] Birth-death prior on phylogeny and speed dating [J].

Akerborg, Orjan ;

Sennblad, Bengt ;

Lagergren, Jens .

BMC EVOLUTIONARY BIOLOGY, 2008, 8 (1)

[2] Explosive diversification of marine fishes at the Cretaceous-Palaeogene boundary [J].

Alfaro, Michael E. ;

Faircloth, Brant C. ;

Harrington, Richard C. ;

Sorenson, Laurie ;

Friedman, Matt ;

Thacker, Christine E. ;

Oliveros, Carl H. ;

Cerny, David ;

Near, Thomas J. .

NATURE ECOLOGY & EVOLUTION, 2018, 2 (04) :688-696

[3] Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates [J].

Alfaro, Michael E. ;

Santini, Francesco ;

Brock, Chad ;

Alamillo, Hugo ;

Dornburg, Alex ;

Rabosky, Daniel L. ;

Carnevale, Giorgio ;

Harmon, Luke J. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (32) :13410-13414

[4]

[Anonymous], BAYESTRAITS V 3 0 1

[5]

[Anonymous], SPEC FUNG

[6]

[Anonymous], 2003, CLUST WORLD C EXP 4

[7]

[Anonymous], EVOLUTION

[8]

[Anonymous], 2000, GRAPH CLUSTERING FLO

[9] Extinction can be estimated from moderately sized molecular phylogenies [J].

Beaulieu, Jeremy M. ;

O'Meara, Brian C. .

EVOLUTION, 2015, 69 (04) :1036-1043

[10] The angiosperm radiation revisited, an ecological explanation for Darwin's 'abominable mystery' [J].

Berendse, Frank ;

Scheffer, Marten .

ECOLOGY LETTERS, 2009, 12 (09) :865-872

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