Deep multiple instance learning for automatic detection of diabetic retinopathy in retinal images

被引:71
作者
Zhou, Lei [1 ]
Zhao, Yu [1 ]
Yang, Jie [1 ]
Yu, Qi [2 ]
Xu, Xun [2 ]
机构
[1] Shanghai Jiao Tong Univ, Inst Image Proc & Pattern Recognit, Shanghai, Peoples R China
[2] Shanghai Jiao Tong Univ, Shanghai Gen Hosp, Shanghai, Peoples R China
关键词
learning (artificial intelligence); medical image processing; neural nets; image classification; deep multiple instance learning; automatic detection; diabetic retinopathy; retinal images; weakly supervised learning technique; DR lesions; DR image classification; image-level annotation; pre-trained convolutional neural network; patch-level DR estimation; global aggregation; end-to-end multi-scale scheme; Kaggle dataset; COMPUTER-AIDED DIAGNOSIS; VESSEL SEGMENTATION; NEURAL-NETWORKS; FRAMEWORK;
D O I
10.1049/iet-ipr.2017.0636
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
As a weakly supervised learning technique, multiple instance learning (MIL) has shown an advantage over supervised learning methods for automatic detection of diabetic retinopathy (DR): only the image-level annotation is needed to achieve both detection of DR images and DR lesions, making more graded and de-identified retinal images available for learning. However, the performance of existing studies on this technique is limited by the use of handcrafted features. The authors propose a deep MIL method for DR detection, which jointly learns features and classifiers from data and achieves a significant improvement on detecting DR images and their inside lesions. Specifically, a pre-trained convolutional neural network is adapted to achieve the patch-level DR estimation, and then global aggregation is used to make the classification of DR images. Further, the authors propose an end-to-end multi-scale scheme to better deal with the irregular DR lesions. For detection of DR images, they achieve an area under the ROC curve of 0.925 on a subset of a Kaggle dataset, and 0.960 on Messidor. For detection of DR lesions, they achieve an F1-score of 0.924 with sensitivity 0.995 and precision 0.863 on DIARETDB1 using the connected component-level validation.
引用
收藏
页码:563 / 571
页数:9
相关论文
共 34 条
[1]   Improved Automated Detection of Diabetic Retinopathy on a Publicly Available Dataset Through Integration of Deep Learning [J].
Abramoff, Michael David ;
Lou, Yiyue ;
Erginay, Ali ;
Clarida, Warren ;
Amelon, Ryan ;
Folk, James C. ;
Niemeijer, Meindert .
INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2016, 57 (13) :5200-5206
[2]   An ensemble-based system for automatic screening of diabetic retinopathy [J].
Antal, Balint ;
Hajdu, Andras .
KNOWLEDGE-BASED SYSTEMS, 2014, 60 :20-27
[3]   Solving the multiple instance problem with axis-parallel rectangles [J].
Dietterich, TG ;
Lathrop, RH ;
LozanoPerez, T .
ARTIFICIAL INTELLIGENCE, 1997, 89 (1-2) :31-71
[4]   Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique [J].
Greenspan, Hayit ;
van Ginneken, Bram ;
Summers, Ronald M. .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2016, 35 (05) :1153-1159
[5]   Global estimates of diabetes prevalence for 2013 and projections for 2035 [J].
Guariguata, L. ;
Whiting, D. R. ;
Hambleton, I. ;
Beagley, J. ;
Linnenkamp, U. ;
Shaw, J. E. .
DIABETES RESEARCH AND CLINICAL PRACTICE, 2014, 103 (02) :137-149
[6]   Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs [J].
Gulshan, Varun ;
Peng, Lily ;
Coram, Marc ;
Stumpe, Martin C. ;
Wu, Derek ;
Narayanaswamy, Arunachalam ;
Venugopalan, Subhashini ;
Widner, Kasumi ;
Madams, Tom ;
Cuadros, Jorge ;
Kim, Ramasamy ;
Raman, Rajiv ;
Nelson, Philip C. ;
Mega, Jessica L. ;
Webster, R. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2016, 316 (22) :2402-2410
[7]   Deep Residual Learning for Image Recognition [J].
He, Kaiming ;
Zhang, Xiangyu ;
Ren, Shaoqing ;
Sun, Jian .
2016 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2016, :770-778
[8]   Patch-based Convolutional Neural Network for Whole Slide Tissue Image Classification [J].
Hou, Le ;
Samaras, Dimitris ;
Kurc, Tahsin M. ;
Gao, Yi ;
Davis, James E. ;
Saltz, Joel H. .
2016 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2016, :2424-2433
[9]   Multimodal Retinal Vessel Segmentation From Spectral-Domain Optical Coherence Tomography and Fundus Photography [J].
Hu, Zhihong ;
Niemeijer, Meindert ;
Abramoff, Michael D. ;
Garvin, Mona K. .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2012, 31 (10) :1900-1911
[10]  
Kaggle, 2015, Diabetic Retinopathy Detection