Draft genome of the wheat A-genome progenitor Triticum urartu

被引：570

作者：

Ling, Hong-Qing ^{[1
]}

Zhao, Shancen ^{[2
,3
,4
]}

Liu, Dongcheng ^{[1
]}

Wang, Junyi ^{[1
,2
]}

Sun, Hua ^{[1
]}

Zhang, Chi ^{[2
]}

Fan, Huajie ^{[1
]}

Li, Dong ^{[2
]}

Dong, Lingli ^{[1
]}

Tao, Yong ^{[2
]}

Gao, Chuan ^{[2
]}

Wu, Huilan ^{[1
]}

Li, Yiwen ^{[1
]}

Cui, Yan ^{[1
]}

Guo, Xiaosen ^{[2
]}

Zheng, Shusong ^{[1
]}

Wang, Biao ^{[1
]}

Yu, Kang ^{[1
]}

Liang, Qinsi ^{[2
]}

Yang, Wenlong ^{[1
]}

Lou, Xueyuan ^{[1
]}

Chen, Jie ^{[2
]}

Feng, Mingji ^{[2
]}

Jian, Jianbo ^{[2
]}

Zhang, Xiaofei ^{[1
]}

Luo, Guangbin ^{[1
]}

Jiang, Ying ^{[2
]}

Liu, Junjie ^{[2
]}

Wang, Zhaobao ^{[2
]}

Sha, Yuhui ^{[2
]}

Zhang, Bairu ^{[1
]}

Wu, Huajun ^{[5
]}

Tang, Dingzhong ^{[1
]}

Shen, Qianhua ^{[1
]}

Xue, Pengya ^{[1
]}

Zou, Shenhao ^{[1
]}

Wang, Xiujie ^{[5
]}

Liu, Xin ^{[1
]}

Wang, Famin ^{[1
]}

Yang, Yanping ^{[1
]}

An, Xueli ^{[1
]}

Dong, Zhenying ^{[1
]}

Zhang, Kunpu ^{[1
]}

Zhang, Xiangqi ^{[1
]}

Luo, Ming-Cheng ^{[6
]}

Dvorak, Jan ^{[6
]}

Tong, Yiping ^{[1
]}

Wang, Jian ^{[2
]}

Yang, Huanming ^{[2
]}

Li, Zhensheng ^{[1
]}

机构：

[1] Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Cell & Chromosome Engn, Beijing 100101, Peoples R China

[2] BGI Shenzhen, Shenzhen 518038, Peoples R China

[3] Chinese Univ Hong Kong, State Key Lab Agrobiotechnol, Hong Kong, Hong Kong, Peoples R China

[4] Chinese Univ Hong Kong, Sch Life Sci, Hong Kong, Hong Kong, Peoples R China

[5] Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China

[6] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA

[7] Univ Copenhagen, Dept Biol, DK-2200 Copenhagen, Denmark

[8] King Abdulaziz Univ, Jeddah 21589, Saudi Arabia

来源：

NATURE | 2013年 / 496卷 / 7443期

关键词：

EVOLUTION; GENE; IDENTIFICATION; LOCI; MAP;

D O I：

10.1038/nature11997

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Bread wheat (Triticum aestivum, AABBDD) is one of the most widely cultivated and consumed food crops in the world. However, the complex polyploid nature of its genome makes genetic and functional analyses extremely challenging. The A genome, as a basic genome of bread wheat and other polyploid wheats, for example, T. turgidum (AABB), T. timopheevii (AAGG) and T. zhukovskyi (AAGGA(m)A(m)), is central to wheat evolution, domestication and genetic improvement(1). The progenitor species of the A genome is the diploid wild einkorn wheat T. urartu(2), which resembles cultivated wheat more extensively than do Aegilops speltoides (the ancestor of the B genome(3)) and Ae. tauschii (the donor of the D genome(4)), especially in the morphology and development of spike and seed. Here we present the generation, assembly and analysis of a whole-genome shotgun draft sequence of the T. urartu genome. We identified protein-coding gene models, performed genome structure analyses and assessed its utility for analysing agronomically important genes and for developing molecular markers. Our T. urartu genome assembly provides a diploid reference for analysis of polyploid wheat genomes and is a valuable resource for the genetic improvement of wheat.

引用

页码：87 / 90

页数：4

共 26 条

[1]

[Anonymous], 2011, FAOSTAT

[2]

[Anonymous], 2012, NATURE, DOI [DOI 10.1038/NATURE11543, 10.1038/nature11543]

[3] NUCLEAR-DNA AMOUNTS IN ANGIOSPERMS [J].

BENNETT, MD ;

SMITH, JB .

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1976, 274 (933) :227-274

[4] Analysis of the breadwheat genome using whole-genome shotgun sequencing [J].

Brenchley, Rachel ;

Spannagl, Manuel ;

Pfeifer, Matthias ;

Barker, Gary L. A. ;

D'Amore, Rosalinda ;

Allen, Alexandra M. ;

McKenzie, Neil ;

Kramer, Melissa ;

Kerhornou, Arnaud ;

Bolser, Dan ;

Kay, Suzanne ;

Waite, Darren ;

Trick, Martin ;

Bancroft, Ian ;

Gu, Yong ;

Huo, Naxin ;

Luo, Ming-Cheng ;

Sehgal, Sunish ;

Gill, Bikram ;

Kianian, Sharyar ;

Anderson, Olin ;

Kersey, Paul ;

Dvorak, Jan ;

McCombie, W. Richard ;

Hall, Anthony ;

Mayer, Klaus F. X. ;

Edwards, Keith J. ;

Bevan, Michael W. ;

Hall, Neil .

NATURE, 2012, 491 (7426) :705-710

[5]

Chen Nansheng, 2004, Curr Protoc Bioinformatics, VChapter 4, DOI 10.1002/0471250953.bi0410s05

[6] Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces [J].

Choulet, Frederic ;

Wicker, Thomas ;

Rustenholz, Camille ;

Paux, Etienne ;

Salse, Jerome ;

Leroy, Philippe ;

Schlub, Stephane ;

Le Paslier, Marie-Christine ;

Magdelenat, Ghislaine ;

Gonthier, Catherine ;

Couloux, Arnaud ;

Budak, Hikmet ;

Breen, James ;

Pumphrey, Michael ;

Liu, Sixin ;

Kong, Xiuying ;

Jia, Jizeng ;

Gut, Marta ;

Brunel, Dominique ;

Anderson, James A. ;

Gill, Bikram S. ;

Appels, Rudi ;

Keller, Beat ;

Feuillet, Catherine .

PLANT CELL, 2010, 22 (06) :1686-1701

[7] NB-LRRs work a "bait and switch" on pathogens [J].

Collier, Sarah M. ;

Moffett, Peter .

TRENDS IN PLANT SCIENCE, 2009, 14 (10) :521-529

[8]

DVORAK J, 1993, GENOME, V36, P21, DOI 10.1139/g93-004

[9] VARIATION IN REPEATED NUCLEOTIDE-SEQUENCES SHEDS LIGHT ON THE PHYLOGENY OF THE WHEAT B-GENOMES AND G-GENOMES [J].

DVORAK, J ;

ZHANG, HB .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1990, 87 (24) :9640-9644

[10] Creating a honey bee consensus gene set [J].

Elsik, Christine G. ;

Mackey, Aaron J. ;

Reese, Justin T. ;

Milshina, Natalia V. ;

Roos, David S. ;

Weinstock, George M. .

GENOME BIOLOGY, 2007, 8 (01)

← 1 2 3 →