An approach for reducing the error rate in automated lung segmentation

被引:16
作者
Gill, Gurman [1 ,2 ]
Beichel, Reinhard R. [1 ,2 ,3 ]
机构
[1] Univ Iowa, Dept Elect & Comp Engn, Iowa City, IA 52242 USA
[2] Univ Iowa, Iowa Inst Biomed Imaging, Iowa City, IA 52242 USA
[3] Univ Iowa, Dept Internal Med, Iowa City, IA 52242 USA
关键词
Lung segmentation; Segmentation fusion; Classification; Computed tomography; COMPUTED-TOMOGRAPHY; PATHOLOGICAL LUNG; SCANS;
D O I
10.1016/j.compbiomed.2016.06.022
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Robust lung segmentation is challenging, especially when tens of thousands of lung CT scans need to be processed, as required by large multi-center studies. The goal of this work was to develop and assess a method for the fusion of segmentation results from two different methods to generate lung segmentations that have a lower failure rate than individual input segmentations. As basis for the fusion approach, lung segmentations generated with a region growing and model-based approach were utilized. The fusion result was generated by comparing input segmentations and selectively combining them using a trained classification system. The method was evaluated on a diverse set of 204 CT scans of normal and diseased lungs. The fusion approach resulted in a Dice coefficient of 0.9855 +/- 0.0106 and showed a statistically significant improvement compared to both input segmentation methods. In addition, the failure rate at different segmentation accuracy levels was assessed. For example, when requiring that lung segmentations must have a Dice coefficient of better than 0.97, the fusion approach had a failure rate of 6.13%. In contrast, the failure rate for region growing and model-based methods was 18.14% and 15.69%, respectively. Therefore, the proposed method improves the quality of the lung segmentations, which is important for subsequent quantitative analysis of lungs. Also, to enable a comparison with other methods, results on the LOLA11 challenge test set are reported. (C) 2016 Elsevier Ltd. All rights reserved.
引用
收藏
页码:143 / 153
页数:11
相关论文
共 23 条
[1]   Pleural Effusion: Characterization with CT Attenuation Values and CT Appearance [J].
Abramowitz, Yigal ;
Simanovsky, Natalia ;
Goldstein, Michael S. ;
Hiller, Nurith .
AMERICAN JOURNAL OF ROENTGENOLOGY, 2009, 192 (03) :618-623
[2]  
[Anonymous], 2008, Image Processing, Analysis, and Machine Vision
[3]   Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts [J].
Bauer, Christian ;
Eberlein, Michael ;
Beichel, Reinhard R. .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2015, 34 (05) :1063-1076
[4]   AN ALTERNATIVE METHOD FOR SIGNIFICANCE TESTING OF WAVE-FORM DIFFERENCE POTENTIALS [J].
BLAIR, RC ;
KARNISKI, W .
PSYCHOPHYSIOLOGY, 1993, 30 (05) :518-524
[5]   Partitioning nominal attributes in decision trees [J].
Coppersmith, D ;
Hong, SJ ;
Hosking, JRM .
DATA MINING AND KNOWLEDGE DISCOVERY, 1999, 3 (02) :197-217
[6]   Robust Initialization of Active Shape Models for Lung Segmentation in CT Scans: A Feature-Based Atlas Approach [J].
Gill, Gurman ;
Toews, Matthew ;
Beichel, Reinhard R. .
INTERNATIONAL JOURNAL OF BIOMEDICAL IMAGING, 2014, 2014
[7]  
Gill G, 2014, LECT NOTES COMPUT SC, V8887, P511, DOI 10.1007/978-3-319-14249-4_48
[8]   A method for avoiding overlap of left and right lungs in shape model guided segmentation of lungs in CT volumes [J].
Gill, Gurman ;
Bauer, Christian ;
Beichel, Reinhard R. .
MEDICAL PHYSICS, 2014, 41 (10)
[9]  
Kuhnigk J.-M., 2005, RADIOGRAPHICS, V25
[10]   Automated lung segmentation in X-ray computed tomography: Development and evaluation of a heuristic threshold-based scheme [J].
Leader, JK ;
Zheng, B ;
Rogers, RM ;
Sciurba, FC ;
Perez, A ;
Chapman, BE ;
Patel, S ;
Fuhrman, CR ;
Gur, D .
ACADEMIC RADIOLOGY, 2003, 10 (11) :1224-1236